Detail information of AT2G07050_circ_g.1


General Information
CircRNA Name AT2G07050_circ_g.1
ID in PlantcircBase ath_circ_012994
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2925619-2926522  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method PcircRNA_finder
Parent gene AT2G07050
Parent gene annotation Cycloartenol synthase
Parent gene strand +
Alternative splicing AT2G07050_circ_g.2 AT2G07050_circ_g.3 AT2G07050_circ_g.4 AT2G07050_circ_g.5 AT2G07050_circ_g.6 AT2G07050_circ_g.7 AT2G07050_circ_g.8 AT2G07050_circ_g.9 AT2G07050_circ_g.10 AT2G07050_circ_g.11 AT2G07050_circ_g.12 AT2G07050_circ_g.13 AT2G07050_circ_g.14 AT2G07050_circ_g.15 AT2G07050_circ_g.16 AT2G07050_circ_g.17
Support reads 7
Tissues leaf
Exon boundary   No-No
Splicing signals   AG-GT
Number of exons covered AT2G07050.1:4
AT2G07050.2:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATACTGTAAATAAAGGTACTTGGAGCTTTTGAATGGTCCGGAAATAACCCACTGCCACCTGA
GATATGGCTTCTCCCATATTTCCTGCCAATACATCCagttttcaagagaaaatttgattagccc
agttttacctcaagtcaaaatcgaagacactgatgatgttacagaggagatggtggaaaccacg
ttaaagag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTTTTCAAGAGAAAATTTGATTAGCCCAGTTTTACCTCAAGTCAAAATCGAAGACACTGATGA
TGTTACAGAGGAGATGGTGGAAACCACGTTAAAGAGGGGTCTAGATTTCTATTCAACTATACAG
GCACACGACGGGCACTGGCCAGGTGATTATGGTGGTCCTATGTTTCTTCTCCCAGGACTGGTCA
GTTCATATGTTTCGTGCCTAAGCTTTCTTTTGCAAATTTTACGGAAAACTTGACAAAAACTACT
TTTGATTACAGATAATTACACTCTCCATAACTGGAGCACTGAATACAGTATTGTCGGAACAACA
TAAACAAGAAATGCGCCGTTATCTCTATAATCACCAGGCAAGAAATTTCTCGTATCTTTACTAT
AATTCTGTTTCCTTGCAATGCTGTACTTGGATTTTCCATCGCAAAATAGATGTTTACACATCTT
TCTGTTTCAAAGATTTTCGTCTTCTACTTTCTAATTGTTAAACTAATTTGCACTATTGGTGGCA
TGTGGTTTCAGAATGAGGACGGAGGTTGGGGTTTACATATTGAGGGCCCTAGCACCATGTTTGG
GTCTGTGTTGAACTATGTTACTCTAAGGTTGCTTGGAGAAGGACCTAACGATGGAGATGGAGAT
ATGGAGAAAGGACGAGACTGGATACTAAATCATGGTGGTGCTACCAATATTACATCTTGGGGGA
AAATGTGGCTATCGGTACTAAAGTTTTGACCTCTATCTGTCCTTTAAAGTTATCGTATGAAAAT
TTCTGTTACTTGACTCATCTTTTTGCTTGGATCTGCTAATACTGTAAATAAAGGTACTTGGAGC
TTTTGAATGGTCCGGAAATAACCCACTGCCACCTGAGATATGGCTTCTCCCATATTTCCTGCCA
ATACATCC
Conservation Information
Conserved circRNAs NA
PMCS 0.271735043
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017