Detail information of Os08g0223766_circ_igg.1


General Information
CircRNA Name Os08g0223766_circ_igg.1
ID in PlantcircBase osa_circ_042772
Alias NA
Organism Oryza sativa
Position chr8: 7494293-7498541  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRI-long
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os08g0223766_circ_igg.2 Os08g0223766_circ_g.1 Os08g0223766_circ_g.2 Os08g0223766_circ_g.3 Os08g0223766_circ_g.4 Os08g0223766_circ_g.5 Os08g0223766_circ_g.6 Os08g0223766_circ_ag.1 Os08g0223833_circ_g.1 Os08g0223833_circ_g.2
Support reads NA
Tissues root
Exon boundary   NA-NA
Splicing signals   GC-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGTGTTGATTTTTATTTCACATTTTGTTATCTCATGATGCAGAATATGTATAGGAAAGCAGCT
GAATTTTGGGCCGAGTTGCGTGTTGAACTCCTTTCAttatttttgtaacttatagcagcttgat
agcatcctctgagaaaggccgttcccgtttgcagcaattgatagagtggtgtgggtctgagttc
gatggtct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 527
Transcript exons: 7494293-7494408,7494531-7494608,7496155-7496287,7497952-
7498012,7498203-7498284,7498485-7498541
TTATTTTTGTAACTTATAGCAGCTTGATAGCATCCTCTGAGAAAGGCCGTTCCCGTTTGCAGCA
ATTGATAGAGTGGTGTGGGTCTGAGTTCGATGGTCTTCTGGTGTTTGATGAGTGCCACAAAGCA
AAAAATCTGATTCCTGAGGCAGGGAGCCAGCCCACTCGAACTGGTAAAGCAGTTCTTGAGATCC
AGGAAATGTTACCTGAAGCTCGGGTGGTTTACTGCTCAGCAACTGGTGCATCAGAGCCTCGAAA
TCTGGGTTATATGGTTCGCCTTGGTCTCTGGGGAGATGGAACATCATTTCAGAATTTTCAGAAA
TTTCTAGGTGCTCTTGAGAAAGGTGGTGTGGGTGCTCTTGAACTTGTTGCTATGGACATGAAAG
CCAGGGGTATGTATGTTTGCAGAACGCTAAGTTATAAGGGTGCTGCTTTTGCTACCGTGGAAGC
TCCTCTAGAGGAAAGAATGATGAATATGTATAGGAAAGCAGCTGAATTTTGGGCCGAGTTGCGT
GTTGAACTCCTTTCA

Genomic sequence TTATTTTTGTAACTTATAGCAGCTTGATAGCATCCTCTGAGAAAGGCCGTTCCCGTTTGCAGCA
ATTGATAGAGTGGTGTGGGTCTGAGTTCGATGGTCTTCTGGTGTTTGATGAGGTAAAGAAGACT
CTGGTATAAATATTAATCGATTGTGCTAGGCATCTTCTAGTTAGCATGCAATTTTCTATTCAAT
CCGCTGCAAATTAATCTGGTATGCTTAAATGATGTGTTTCTTGCAGTGCCACAAAGCAAAAAAT
CTGATTCCTGAGGCAGGGAGCCAGCCCACTCGAACTGGTAAAGCAGTTCTTGAGATCCAGGTGT
GTGACTATATATATATTTTGGGTTGATTAGATACGTGCCATTAAAAAATTGTGGAAATATGCCA
TTACTATTTGCGTATTTGTAACGATGCCACTGCTACTTGTTGATAATCTTAGTGGTGCCACTGA
GATACATATTTTGCTTGTATTGGACGAAATGCCCTTATCTTCTACCTCTCTCTTCCCTCATCTT
CTACCTCTCTCTCTTCCCTCATCCTTTCCCATCTCTCTGACCCGAATCGACGCCTCACCGCTAC
TTCTCGACTAGGTTGGCCCGTCAACGTCACGTCAGGTGCCGAGGTGGCAGAGAGCACCGGACAG
GTCCCCACGGCTCTTCACGAAGGCGATCCTCGCCGCGTCAGGTGCCGAGGTGGTCGGCGGCGGG
GAGGTGGAGAGCGTCAGGCGGCTGCTCGCTCCTCGGTCCTCGTTTCTTCGTCGCCTAGGGACTC
TTCGTGGTGAGGAGAGGTGACCGGATTTGGGACTCATTGGCCTCCCTCTTTCCCGACTCCGCCT
TGCCAGCCGCGTAGAGGGATAAAGGGAGGGAGGAGATATGCCATCGGCGCCGGTGACCGTGAGC
CTTGCAGTGACATCGTCGTCGTCAGTGTGGAGCTCTACAGGAGATGGTCGGCGGTGGCGCGAGG
TGGAGGGAGACATAGGTGTCGTGGATGAAGAGCGCCAGAAAGGGAGGCGGCGGCGACTGCGGTG
GTCATGTCCATTGACAGCTGTGCTTGTGGTCGCCGCTGTCAAGCCATCGCTGTCTCAGGTTGTC
GAAGAGAAGAGGGGGAAAGGGGAGGAAGGAAGAAGAAGGGCAATTTTGTCCAATCTTTTTTTGT
ACATGCATCCAAGGGGTAAATAGTGGCATGTCTCAAATATGTCTAAAATTATAATGGCACGGTT
CCAAATACTTGAATACTAGTGGCAAATTTCAAAACCAGCATATTTTTAATGGCATGGATCTAAT
TAACCCTTTTTTTCTTGCTCTGGTCTCCCTATGATCAACAGAACATTACTAGTATACATTTATT
GCGGTCATCTTATGTAGCCGACTTTTTGAATATAAATTCTTTGGCCCTGGAAAGCAAACACTTT
CCTAGAGTGATAGCATATACTTCCTCTGTCCATGAATATAAAGCACTTTTGGAACAGTGCTAAG
TAATTTTTTTTTAACTTTTGTCTATCATCAATAGCACAAAAATTATAACAATTGACTACATAAG
AATAATGTTTCTAGATCTATCGTGAAACAAAATATCATAATATGCAACTCTTTGTATTTAAAAT
AGTTTATTTTTATAGATGTTATTAGTCAAAGTAGCATATCGAAGACCGTGTTGATGCCCAAAAG
TGCTTATATTTGTGGATGGAGGGAGTATTTTTCAAATATCAAACCAGAAGTCAATGACCTTATG
TTGTATGTTGTGATGTTATAGTATTATTCCTCATTCCTCAATTTGATAGATTATGTGGTATCTG
GGATGGGATGATTCTTTCAAAGAAATTCTACTGATGATCTGTTCTTAATTATTGTCACCAAACA
TTGCAGGAAATGTTACCTGAAGCTCGGGTGGTTTACTGCTCAGCAACTGGTGCATCAGAGCCTC
GAAATCTGGGTTATATGGTTCGCCTTGGTCTCTGGGGAGATGGAACATCATTTCAGAATTTTCA
GAAATTTCTAGGTTTATTTTTGTTCCTTTATACTTATATTTTATTTTTTTATATACCTTTCCAT
TTGTGTTTGCATGTTATCGTAATTCATACAAAAATTTCAAATAATTATTTCCAATGCCGACCAG
CTACCATCATAATAACAATTTCAATATATAAGGGCATGAGCAGTAGTAGACTAGTAGTTGTCTC
TTATCAAAGCATAGCAGTAGTTGTCCACTTTCCCTGCAAAATGCGAATCAGAAGCAGGTCAATA
GGCTAAGAGACGAAATGAGCAGATCTTTTTGCTGCATTATTTCCTTTTTCAACAGATAGTAAAG
TACTATCCGCTGTCTGTGTTCGGTAAAGTTATCTTGAAAGGCTTAGTGATCACCACTGTCGAGC
ACTTTTTTTTTTTCTTTGGGAGAAAAAATATATACCAAGAGCTGTTTACAACTAGCACTGGTAT
TAGTGGAAGAAGAATTTCCTCCATTCACTATTGATGGACCTGGCAATTTTGCCCACAAGTTACC
CATAGTACAACATATCCTTTATGTTATTTTTTGTGCTTAAATAACTATGATGAGAAACGGCACT
TGTGAAATCCAATAGAAAATTAAGACAAAGTTCACTTTCAACTCTGAATTTTCATTTTTTGGCC
TTGGTTCACTTTCCCCCTGAACTGCACAGGTCACCACCCTTCATCCGATCTTAATTTTCTATTG
GATTTCACAAGTGCCATTTCTCATCATAGTTACTAAAGCATAAAAATAACATAAAAGGACATGT
AGTCCACTTCTTAACTCTGAAATTTTCATTTGGCCATGGTTCACTTTTGCCCTGAACTTCACCC
TTGATCCAATCCACTCTTGTGAGCCATGTGTAAGTTTTGAGTGTGGATGTCGAGGCAATGAAAT
GACTTTGACAAATTAAACTTCAAAATGTTGCTTACACGGGAGGCCCACATGTAAGTGGAAATAA
GCTTCTTTGTTATCTATTAGCTTCCTTTCTAACCTTCTCTCCTCTCCCCACTTCAATGAGTCTC
CCCTGTACAAACTGTTTGCCGGGCACTTGTGTTGGACGCACTAGATCAGCCAGTGGTCCAGCCT
GGGAGACTTTGTCATGCTGTAGGCATACCTCTAGTCGAAACACACTTTTCAGAACCTCAAAAAG
GATCTCAACTTCTTGATTCAATTTTGGTTCTTGGAATTAGTATCTGCTGAGATGCAACTCGTGA
TGAGCATTTTTTTTTTGTTTTTTTCTTTGGGCTCTCCTTTTTGTTCAGTATTCGAAAATTTTAG
TTTTCTAACAGTGCAAACCAAAATTCATGTCGAGGAAATAAACCACACTAAAAATACAAATTGG
TTCAGTTTGCGGTTAAAACCATATATTGATGTTAGCAATTCATCAGTTCTGCAAAGAAATGAGA
AGAGGATGAGGAGAGATGGGGTGAGGATGACATGTCCATGGGGATCCAATAATTTTTTTCATTC
TGTTTTCTGAGTATTTGCCATTCCAACAAAACCACTGATAAGTCATAAAAGATCACCATAATTT
GGCTGGGGGTAAAGTGGACAGTTTTGATAGTTAAAAGGTTGTGTAGTAGACATTTTAAGTTTAG
TTTTGATAAATGAACTTATTTACAGTTTAATAATGATGTTTGCCATCCTTTACAAGCTATGGTA
ACCTTTCTCAGGTGCTCTTGAGAAAGGTGGTGTGGGTGCTCTTGAACTTGTTGCTATGGACATG
AAAGCCAGGTTAGCTCTTCCTGGAACTTCTCGGTGGTTCGGTTCTACCTTTTACACACATCGTA
GTTGACATGAAGAGCCCTTATGCATTGGGTGTATATACAAATTGCTCTTTCTGTACATAGGTAA
GCCAATTACCTCGTTGATACATTTCCTCTTCTAATAATGATTGGTATACCTCTTGTTCAACTTG
TCCCAGGGGTATGTATGTTTGCAGAACGCTAAGTTATAAGGGTGCTGCTTTTGCTACCGTGGAA
GCTCCTCTAGAGGAAAGAATGATGGTAAGATTGATGCTCCTTATTTTCTGCTTTTATTTTGGTG
GTATGATTAGTTTACTTTGAACCATTTTAAAAATCTTTATAGTTTACAATGTGATTTCACATAA
CATTAAAAACCAATGTTATGTTTAGCCTTTTCTAATCATTTTTTGTGTAGTGCTGGTGTTGATT
TTTATTTCACATTTTGTTATCTCATGATGCAGAATATGTATAGGAAAGCAGCTGAATTTTGGGC
CGAGTTGCGTGTTGAACTCCTTTCA
Conservation Information
Conserved circRNAs NA
PMCS 0.095541904
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study