Plant Circular RNA Database

Detail information of Os02g0760200_circ_g.11

			
						 General Information
					
						CircRNA Name
						Os02g0760200_circ_g.11
					
						ID in PlantcircBase
						osa_circ_016645
					
						Alias
						Os_ciR8110
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 32015284-32016042  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder, find_circ
					
						Parent gene
						
							Os02g0760200						
					
						Parent gene annotation
						
							Conserved hypothetical protein. (Os02t0760200-01);Conserved hypo
thetical protein. (Os02t0760200-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0760200_circ_g.2 Os02g0760200_circ_g.3 Os02g0760200_circ_g.4 Os02g0760200_circ_g.5 Os02g0760200_circ_g.6 Os02g0760200_circ_g.7 Os02g0760200_circ_g.8 Os02g0760200_circ_g.9 Os02g0760200_circ_g.10 Os02g0760200_circ_g.12 Os02g0760200_circ_g.13 						
					
						Support reads
						2/5
					
						Tissues
						root/shoot, root, seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0760200-02:2
Os02t0760200-01:2

General Information
CircRNA Name	Os02g0760200_circ_g.11
ID in PlantcircBase	osa_circ_016645
Alias	Os_ciR8110
Organism	Oryza sativa
Position	chr2: 32015284-32016042 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, PcircRNA_finder, find_circ
Parent gene	Os02g0760200
Parent gene annotation	Conserved hypothetical protein. (Os02t0760200-01);Conserved hypo thetical protein. (Os02t0760200-02)
Parent gene strand	+
Alternative splicing	Os02g0760200_circ_g.2 Os02g0760200_circ_g.3 Os02g0760200_circ_g.4 Os02g0760200_circ_g.5 Os02g0760200_circ_g.6 Os02g0760200_circ_g.7 Os02g0760200_circ_g.8 Os02g0760200_circ_g.9 Os02g0760200_circ_g.10 Os02g0760200_circ_g.12 Os02g0760200_circ_g.13
Support reads	2/5
Tissues	root/shoot, root, seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0760200-02:2 Os02t0760200-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GAAGGACCAACTTGTTGAGGCAATAAATCATGTACACAAGGTCACTGAAGTCCATGTGTTTGTA
GCTATATGCCGAGGTTTTTGGGACCGAATGGGACAGctgggcattctcctgaatacaatgaaaa
gactattagatgttttgcggccaaggattgagagtcatctgaagtcatggagttcttgtatgcc
taatggag

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 399
Transcript exons: 32015284-32015487,32015848-32016042
CTGGGCATTCTCCTGAATACAATGAAAAGACTATTAGATGTTTTGCGGCCAAGGATTGAGAGTC
ATCTGAAGTCATGGAGTTCTTGTATGCCTAATGGAGGAAACTCTGCAGCTATTGGGGAGAGACT
TAGTGAAGTTACGGTAACACTGAGGGCCAAATTCCGAAACTACATGCAAGCTGTTGTGGAGAAG
CTCTCAGAAAATACTCGCATGCAAAATACTACAAAGCTCAAGAAGATCATTCAGGATTCAAAAG
AATTGGTGATGGAGTCAGATATTCGAAGCAGGATGCAAGCGTTGAAGGACCAACTTGTTGAGGC
AATAAATCATGTACACAAGGTCACTGAAGTCCATGTGTTTGTAGCTATATGCCGAGGTTTTTGG
GACCGAATGGGACAG
						
						Genomic sequence
						
							CTGGGCATTCTCCTGAATACAATGAAAAGACTATTAGATGTTTTGCGGCCAAGGATTGAGAGTC
ATCTGAAGTCATGGAGTTCTTGTATGCCTAATGGAGGAAACTCTGCAGCTATTGGGGAGAGACT
TAGTGAAGTTACGGTAACACTGAGGGCCAAATTCCGAAACTACATGCAAGCTGTTGTGGAGAAG
CTCTCAGAAAATGTGAGTGTATTGCGACATTTTATGCAGTTTTACCTTTTCAAACGCTGACTTA
TTTGCAGTCATTTTAGAGAGAGCTCGCAACCCAGTCACCCTGGACACAAATAGATTTTAATGTC
ATAACTGATCCATTATGCTACTTTGATCTGGAGTCATTTAAAAAAGACACTTTTTAGGGAATTT
AGTCTTGATTATCAGTAATGCTGCTTTGACTAATAGCACTCAATTTTCTGTTCTATATGTAGCA
ATTTAGCAGTCAATTCAACTGCGGAGACAGTTGCTTTGTTGACACCTTTGATGGATGATGTGTT
GTTAAGTTTGTTGAAAAATATTGTATTCTTATCTTCTGTTTTTTTTTTGAAGACTCGCATGCAA
AATACTACAAAGCTCAAGAAGATCATTCAGGATTCAAAAGAATTGGTGATGGAGTCAGATATTC
GAAGCAGGATGCAAGCGTTGAAGGACCAACTTGTTGAGGCAATAAATCATGTACACAAGGTCAC
TGAAGTCCATGTGTTTGTAGCTATATGCCGAGGTTTTTGGGACCGAATGGGACAG

Sequences
Splice junction sequence	GAAGGACCAACTTGTTGAGGCAATAAATCATGTACACAAGGTCACTGAAGTCCATGTGTTTGTA GCTATATGCCGAGGTTTTTGGGACCGAATGGGACAGctgggcattctcctgaatacaatgaaaa gactattagatgttttgcggccaaggattgagagtcatctgaagtcatggagttcttgtatgcc taatggag
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 399 Transcript exons: 32015284-32015487,32015848-32016042 CTGGGCATTCTCCTGAATACAATGAAAAGACTATTAGATGTTTTGCGGCCAAGGATTGAGAGTC ATCTGAAGTCATGGAGTTCTTGTATGCCTAATGGAGGAAACTCTGCAGCTATTGGGGAGAGACT TAGTGAAGTTACGGTAACACTGAGGGCCAAATTCCGAAACTACATGCAAGCTGTTGTGGAGAAG CTCTCAGAAAATACTCGCATGCAAAATACTACAAAGCTCAAGAAGATCATTCAGGATTCAAAAG AATTGGTGATGGAGTCAGATATTCGAAGCAGGATGCAAGCGTTGAAGGACCAACTTGTTGAGGC AATAAATCATGTACACAAGGTCACTGAAGTCCATGTGTTTGTAGCTATATGCCGAGGTTTTTGG GACCGAATGGGACAG
Genomic sequence	CTGGGCATTCTCCTGAATACAATGAAAAGACTATTAGATGTTTTGCGGCCAAGGATTGAGAGTC ATCTGAAGTCATGGAGTTCTTGTATGCCTAATGGAGGAAACTCTGCAGCTATTGGGGAGAGACT TAGTGAAGTTACGGTAACACTGAGGGCCAAATTCCGAAACTACATGCAAGCTGTTGTGGAGAAG CTCTCAGAAAATGTGAGTGTATTGCGACATTTTATGCAGTTTTACCTTTTCAAACGCTGACTTA TTTGCAGTCATTTTAGAGAGAGCTCGCAACCCAGTCACCCTGGACACAAATAGATTTTAATGTC ATAACTGATCCATTATGCTACTTTGATCTGGAGTCATTTAAAAAAGACACTTTTTAGGGAATTT AGTCTTGATTATCAGTAATGCTGCTTTGACTAATAGCACTCAATTTTCTGTTCTATATGTAGCA ATTTAGCAGTCAATTCAACTGCGGAGACAGTTGCTTTGTTGACACCTTTGATGGATGATGTGTT GTTAAGTTTGTTGAAAAATATTGTATTCTTATCTTCTGTTTTTTTTTTGAAGACTCGCATGCAA AATACTACAAAGCTCAAGAAGATCATTCAGGATTCAAAAGAATTGGTGATGGAGTCAGATATTC GAAGCAGGATGCAAGCGTTGAAGGACCAACTTGTTGAGGCAATAAATCATGTACACAAGGTCAC TGAAGTCCATGTGTTTGTAGCTATATGCCGAGGTTTTTGGGACCGAATGGGACAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_012320 						
					
						PMCS
						0.359087549

Conservation Information
Conserved circRNAs	osi_circ_012320
PMCS	0.359087549

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							32015306-32016039(+)
32016013-32015339(+)
32015293-32015972(-)
32015361-32016010(-)
						
						Potential amino acid sequence
						
							MKRLLDVLRPRIESHLKSWSSCMPNGGNSAAIGERLSEVTVTLRAKFRNYMQAVVEKLSENTRM
QNTTKLKKIIQDSKELVMESDIRSRMQALKDQLVEAINHVHKVTEVHVFVAICRGFWDRMGQLG
ILLNTMKRLLDVLRPRIESHLKSWSSCMPNGGNSAAIGERLSEVTVTLRAKFRNYMQAVVEKLS
ENTRMQNTTKLKKIIQDSKELVMESDIRSRMQALKDQLVEAINHVHKVTEVHVFVAICRGFWDR
MGQLGILLNTMKRLLDVLRPRIESHLKSWSSCMPNGGNSAAIGERLSEVTVTLRAKFRNYMQAV
VEKLSENTRMQNTTKLKKIIQDSKELVMESDIRSRMQALKDQLVEAINHVHKVTEVHVFVAICR
GFWDRMGQLGILLNTMKRLLDVLRPRIESHLKSWSSCMPNGGNSAAIGERLSEVTVTLRAKFRN
YMQAVVEKLSENTRMQNTTKLKKIIQDSKELVMESDIRSRMQALKDQLVEAINHVHKVTEVHVF
VAICRGFWDRMGQ(+)
MPRFLGPNGTAGHSPEYNEKTIRCFAAKD*(+)
MPSCPIRSQKPRHIATNTWTSVTLCT*(-)
MTSDDSQSLAAKHLIVFSLYSGECPAVPFGPKNLGI*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	32015306-32016039(+) 32016013-32015339(+) 32015293-32015972(-) 32015361-32016010(-)
Potential amino acid sequence	MKRLLDVLRPRIESHLKSWSSCMPNGGNSAAIGERLSEVTVTLRAKFRNYMQAVVEKLSENTRM QNTTKLKKIIQDSKELVMESDIRSRMQALKDQLVEAINHVHKVTEVHVFVAICRGFWDRMGQLG ILLNTMKRLLDVLRPRIESHLKSWSSCMPNGGNSAAIGERLSEVTVTLRAKFRNYMQAVVEKLS ENTRMQNTTKLKKIIQDSKELVMESDIRSRMQALKDQLVEAINHVHKVTEVHVFVAICRGFWDR MGQLGILLNTMKRLLDVLRPRIESHLKSWSSCMPNGGNSAAIGERLSEVTVTLRAKFRNYMQAV VEKLSENTRMQNTTKLKKIIQDSKELVMESDIRSRMQALKDQLVEAINHVHKVTEVHVFVAICR GFWDRMGQLGILLNTMKRLLDVLRPRIESHLKSWSSCMPNGGNSAAIGERLSEVTVTLRAKFRN YMQAVVEKLSENTRMQNTTKLKKIIQDSKELVMESDIRSRMQALKDQLVEAINHVHKVTEVHVF VAICRGFWDRMGQ(+) MPRFLGPNGTAGHSPEYNEKTIRCFAAKD(+) MPSCPIRSQKPRHIATNTWTSVTLCT(-) MTSDDSQSLAAKHLIVFSLYSGECPAVPFGPKNLGI*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0760200_circ_g.11

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