Plant Circular RNA Database

Detail information of Os02g0760200_circ_g.8

			
						 General Information
					
						CircRNA Name
						Os02g0760200_circ_g.8
					
						ID in PlantcircBase
						osa_circ_016642
					
						Alias
						Os_ciR8109
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 32013465-32015487  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os02g0760200						
					
						Parent gene annotation
						
							Conserved hypothetical protein. (Os02t0760200-01);Conserved hypo
thetical protein. (Os02t0760200-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0760200_circ_g.2 Os02g0760200_circ_g.3 Os02g0760200_circ_g.4 Os02g0760200_circ_g.5 Os02g0760200_circ_g.6 Os02g0760200_circ_g.7 Os02g0760200_circ_g.9 Os02g0760200_circ_g.10 Os02g0760200_circ_g.11 Os02g0760200_circ_g.12 Os02g0760200_circ_g.13 						
					
						Support reads
						2/1
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0760200-02:5
Os02t0760200-01:7

General Information
CircRNA Name	Os02g0760200_circ_g.8
ID in PlantcircBase	osa_circ_016642
Alias	Os_ciR8109
Organism	Oryza sativa
Position	chr2: 32013465-32015487 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os02g0760200
Parent gene annotation	Conserved hypothetical protein. (Os02t0760200-01);Conserved hypo thetical protein. (Os02t0760200-02)
Parent gene strand	+
Alternative splicing	Os02g0760200_circ_g.2 Os02g0760200_circ_g.3 Os02g0760200_circ_g.4 Os02g0760200_circ_g.5 Os02g0760200_circ_g.6 Os02g0760200_circ_g.7 Os02g0760200_circ_g.9 Os02g0760200_circ_g.10 Os02g0760200_circ_g.11 Os02g0760200_circ_g.12 Os02g0760200_circ_g.13
Support reads	2/1
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0760200-02:5 Os02t0760200-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTCTGCAGCTATTGGGGAGAGACTTAGTGAAGTTACGGTAACACTGAGGGCCAAATTCCGAAAC
TACATGCAAGCTGTTGTGGAGAAGCTCTCAGAAAATaaccgcatattaggtgaagttgaggagc
aaattgagcaaactttagcgatggtatttgagaattacaagtctctgaatgaatctttgccgtc
gggtttag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AACCGCATATTAGGTGAAGTTGAGGAGCAAATTGAGCAAACTTTAGCGATGGTATTTGAGAATT
ACAAGTCTCTGAATGAATCTTTGCCGTCGGGTTTAGTGGAAGATTTTAGACCTCCAACTGGTTT
GGCTGCTTGTGCTCTAGAACCAGCTATAAAGCTTTACAGTCTTCTCCATGATGTATTATCTCCA
GAGGCTCAACTCAGATTATGCGGTTATTTCCAGGTCATTCTTCAACTGTTTTATATCTCGATAT
TTATCTTCTATAGCCAGAACTCTGTAGCTTGATTTATTCAAAAATATGTCCAGGCTGCTGCCAG
GAAACGATCAAGACGATACATGCTTGAGACTGATGAATATGTAGCAGGAAATTCCGAAGGCATA
AGAGTGGATCTGGTGACCTTTACAACAGCTTACCAGAAGATGAAATCATTATGCTGTAATCTAC
GTAATGAAATCTTTACAGACATTGAAATTCATAACCAGCACATACTTCCCAGGTATTGTGATTG
TATTGCAACATCTGTTCTAGGCTAGTATATTACCATGTACTGTTATTCATTACTTACTTTGTAT
GCATAGTTTCATTGTAGAGTATTTAGACGCGTTGACTATTCTACTGATTATATTGCTTTTGCTA
TTGTTTCTATTTTTTTCTATCAATCATTTCAATTTTATGTTTGTCCCTCTGCTTCTACAGTTTT
GTTGACCTCCCCAATTTAGCTGCGTCCATCTATAGTGTGGAACTCTCAAATAGACTGCGTGCTT
TTCTTGTGGCATGCCCTCCAACTGGCCCTTCATCACCTGTTGCTGATTTGGTGATTGCAACTGC
TGACTTTCAGAAGGACCTTGCTAGCTGGAATATATGGTAAAAAAGAATTCTTATGTGTTTGCTA
GGTTCTCTTCTTTCTCATGCCTTGTCTAGGCAAGACTGAATTTGAATTTCTGCACAGCCCAATT
AAAGCCGGTGTTGACGCAAAAGAGCTATTTCATTTGTACATTGTCTTATGGATCGAAGACAAGC
GCAGGACGTTGCTGGAAAATTGCAGGATGGATAAGGTAGGTTCTGCTCTTTCTTTTGCTCCTGT
TCATTGTTGATCTATGATATGTTTGGTTAGCACAGGTTCTTCATATGACAAATACCATTTGCTA
TTGGTACTGTGTTGCCTCAGTGTTAATCCAGTATTTATCTTTGCTTTTATTCTCCATTTGTGTA
ACATTGGAGAGGTTATATGTAGGTACTGTGCCCTGGCAGCTACTAAAATAGTTTGTCCACCCAG
GTTTTCAGTCAATATATTTTGTAATTGTATCTCATTATGCATCACCTTCTCCAATTATATCAGG
TTAAATGGTCAGGAGTTAGGACTCAGCATATGACCACACCTTTTGTGGACGAGATGTATGATTT
GCTGAAGAATACATTGACAGAGTACGAGGTTATCATTTGCCGATGGCCAGAATACATATTTGTT
CTTGAGAATGTAAGTTTGTATCATTCATGGGACCTTTATTGAACTGTTGCACAGCAAAGAAATC
CAACTTAACATGTGCTATTTCCTTGCTTTACAATAAAAGGCTATTGCGGATATTGAGAAAGCAG
TGATAGAGTCTCTTGAAAAACAGTACGGGGATGTTTTGGCTCCACTTAAGGATTGTATTGCCCC
AAAGAAATTTGGTCTCAAATATGTGCAGAAACTCACGAAGCGCAATTCAGTTGGCCCCTATACT
GTACCTGAAGATGTAAGTTTTGTTGTTGAACTGTTGGTCCACATTTATTTGAATTTCAAGTCTT
ACTATTTGACCCCTTATTTGCTTTCAGCTGGGCATTCTCCTGAATACAATGAAAAGACTATTAG
ATGTTTTGCGGCCAAGGATTGAGAGTCATCTGAAGTCATGGAGTTCTTGTATGCCTAATGGAGG
AAACTCTGCAGCTATTGGGGAGAGACTTAGTGAAGTTACGGTAACACTGAGGGCCAAATTCCGA
AACTACATGCAAGCTGTTGTGGAGAAGCTCTCAGAAAAT
						
					

			
		

Sequences
Splice junction sequence	CTCTGCAGCTATTGGGGAGAGACTTAGTGAAGTTACGGTAACACTGAGGGCCAAATTCCGAAAC TACATGCAAGCTGTTGTGGAGAAGCTCTCAGAAAATaaccgcatattaggtgaagttgaggagc aaattgagcaaactttagcgatggtatttgagaattacaagtctctgaatgaatctttgccgtc gggtttag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AACCGCATATTAGGTGAAGTTGAGGAGCAAATTGAGCAAACTTTAGCGATGGTATTTGAGAATT ACAAGTCTCTGAATGAATCTTTGCCGTCGGGTTTAGTGGAAGATTTTAGACCTCCAACTGGTTT GGCTGCTTGTGCTCTAGAACCAGCTATAAAGCTTTACAGTCTTCTCCATGATGTATTATCTCCA GAGGCTCAACTCAGATTATGCGGTTATTTCCAGGTCATTCTTCAACTGTTTTATATCTCGATAT TTATCTTCTATAGCCAGAACTCTGTAGCTTGATTTATTCAAAAATATGTCCAGGCTGCTGCCAG GAAACGATCAAGACGATACATGCTTGAGACTGATGAATATGTAGCAGGAAATTCCGAAGGCATA AGAGTGGATCTGGTGACCTTTACAACAGCTTACCAGAAGATGAAATCATTATGCTGTAATCTAC GTAATGAAATCTTTACAGACATTGAAATTCATAACCAGCACATACTTCCCAGGTATTGTGATTG TATTGCAACATCTGTTCTAGGCTAGTATATTACCATGTACTGTTATTCATTACTTACTTTGTAT GCATAGTTTCATTGTAGAGTATTTAGACGCGTTGACTATTCTACTGATTATATTGCTTTTGCTA TTGTTTCTATTTTTTTCTATCAATCATTTCAATTTTATGTTTGTCCCTCTGCTTCTACAGTTTT GTTGACCTCCCCAATTTAGCTGCGTCCATCTATAGTGTGGAACTCTCAAATAGACTGCGTGCTT TTCTTGTGGCATGCCCTCCAACTGGCCCTTCATCACCTGTTGCTGATTTGGTGATTGCAACTGC TGACTTTCAGAAGGACCTTGCTAGCTGGAATATATGGTAAAAAAGAATTCTTATGTGTTTGCTA GGTTCTCTTCTTTCTCATGCCTTGTCTAGGCAAGACTGAATTTGAATTTCTGCACAGCCCAATT AAAGCCGGTGTTGACGCAAAAGAGCTATTTCATTTGTACATTGTCTTATGGATCGAAGACAAGC GCAGGACGTTGCTGGAAAATTGCAGGATGGATAAGGTAGGTTCTGCTCTTTCTTTTGCTCCTGT TCATTGTTGATCTATGATATGTTTGGTTAGCACAGGTTCTTCATATGACAAATACCATTTGCTA TTGGTACTGTGTTGCCTCAGTGTTAATCCAGTATTTATCTTTGCTTTTATTCTCCATTTGTGTA ACATTGGAGAGGTTATATGTAGGTACTGTGCCCTGGCAGCTACTAAAATAGTTTGTCCACCCAG GTTTTCAGTCAATATATTTTGTAATTGTATCTCATTATGCATCACCTTCTCCAATTATATCAGG TTAAATGGTCAGGAGTTAGGACTCAGCATATGACCACACCTTTTGTGGACGAGATGTATGATTT GCTGAAGAATACATTGACAGAGTACGAGGTTATCATTTGCCGATGGCCAGAATACATATTTGTT CTTGAGAATGTAAGTTTGTATCATTCATGGGACCTTTATTGAACTGTTGCACAGCAAAGAAATC CAACTTAACATGTGCTATTTCCTTGCTTTACAATAAAAGGCTATTGCGGATATTGAGAAAGCAG TGATAGAGTCTCTTGAAAAACAGTACGGGGATGTTTTGGCTCCACTTAAGGATTGTATTGCCCC AAAGAAATTTGGTCTCAAATATGTGCAGAAACTCACGAAGCGCAATTCAGTTGGCCCCTATACT GTACCTGAAGATGTAAGTTTTGTTGTTGAACTGTTGGTCCACATTTATTTGAATTTCAAGTCTT ACTATTTGACCCCTTATTTGCTTTCAGCTGGGCATTCTCCTGAATACAATGAAAAGACTATTAG ATGTTTTGCGGCCAAGGATTGAGAGTCATCTGAAGTCATGGAGTTCTTGTATGCCTAATGGAGG AAACTCTGCAGCTATTGGGGAGAGACTTAGTGAAGTTACGGTAACACTGAGGGCCAAATTCCGA AACTACATGCAAGCTGTTGTGGAGAAGCTCTCAGAAAAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.146152278

Conservation Information
Conserved circRNAs	NA
PMCS	0.146152278

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							32013514-32015484(+)
						
					

						Potential amino acid sequence
						
							MVFENYKSLNESLPSGLVEDFRPPTGLAACALEPAIKLYSLLHDVLSPEAQLRLCGYFQAAARK
RSRRYMLETDEYVAGNSEGIRVDLVTFTTAYQKMKSLCCNLRNEIFTDIEIHNQHILPSFVDLP
NLAASIYSVELSNRLRAFLVACPPTGPSSPVADLVIATADFQKDLASWNICPIKAGVDAKELFH
LYIVLWIEDKRRTLLENCRMDKVKWSGVRTQHMTTPFVDEMYDLLKNTLTEYEVIICRWPEYIF
VLENAIADIEKAVIESLEKQYGDVLAPLKDCIAPKKFGLKYVQKLTKRNSVGPYTVPEDLGILL
NTMKRLLDVLRPRIESHLKSWSSCMPNGGNSAAIGERLSEVTVTLRAKFRNYMQAVVEKLSENN
RILGEVEEQIEQTLAMVFENYKSLNESLPSGLVEDFRPPTGLAACALEPAIKLYSLLHDVLSPE
AQLRLCGYFQAAARKRSRRYMLETDEYVAGNSEGIRVDLVTFTTAYQKMKSLCCNLRNEIFTDI
EIHNQHILPSFVDLPNLAASIYSVELSNRLRAFLVACPPTGPSSPVADLVIATADFQKDLASWN
ICPIKAGVDAKELFHLYIVLWIEDKRRTLLENCRMDKVKWSGVRTQHMTTPFVDEMYDLLKNTL
TEYEVIICRWPEYIFVLENAIADIEKAVIESLEKQYGDVLAPLKDCIAPKKFGLKYVQKLTKRN
SVGPYTVPEDLGILLNTMKRLLDVLRPRIESHLKSWSSCMPNGGNSAAIGERLSEVTVTLRAKF
RNYMQAVVEKLSENNRILGEVEEQIEQTLAMVFENYKSLNESLPSGLVEDFRPPTGLAACALEP
AIKLYSLLHDVLSPEAQLRLCGYFQAAARKRSRRYMLETDEYVAGNSEGIRVDLVTFTTAYQKM
KSLCCNLRNEIFTDIEIHNQHILPSFVDLPNLAASIYSVELSNRLRAFLVACPPTGPSSPVADL
VIATADFQKDLASWNICPIKAGVDAKELFHLYIVLWIEDKRRTLLENCRMDKVKWSGVRTQHMT
TPFVDEMYDLLKNTLTEYEVIICRWPEYIFVLENAIADIEKAVIESLEKQYGDVLAPLKDCIAP
KKFGLKYVQKLTKRNSVGPYTVPEDLGILLNTMKRLLDVLRPRIESHLKSWSSCMPNGGNSAAI
GERLSEVTVTLRAKFRNYMQAVVEKLSENNRILGEVEEQIEQTLAMVFENYKSLNESLPSGLVE
DFRPPTGLAACALEPAIKLYSLLHDVLSPEAQLRLCGYFQAAARKRSRRYMLETDEYVAGNSEG
IRVDLVTFTTAYQKMKSLCCNLRNEIFTDIEIHNQHILPSFVDLPNLAASIYSVELSNRLRAFL
VACPPTGPSSPVADLVIATADFQKDLASWNICPIKAGVDAKELFHLYIVLWIEDKRRTLLENCR
MDKVKWSGVRTQHMTTPFVDEMYDLLKNTLTEYEVIICRWPEYIFVLENAIADIEKAVIESLEK
QYGDVLAPLKDCIAPKKFGLKYVQKLTKRNSVGPYTVPEDLGILLNTMKRLLDVLRPRIESHLK
SWSSCMPNGGNSAAIGERLSEVTVTLRAKFRNYMQAVVEKLSEN(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	32013514-32015484(+)
Potential amino acid sequence	MVFENYKSLNESLPSGLVEDFRPPTGLAACALEPAIKLYSLLHDVLSPEAQLRLCGYFQAAARK RSRRYMLETDEYVAGNSEGIRVDLVTFTTAYQKMKSLCCNLRNEIFTDIEIHNQHILPSFVDLP NLAASIYSVELSNRLRAFLVACPPTGPSSPVADLVIATADFQKDLASWNICPIKAGVDAKELFH LYIVLWIEDKRRTLLENCRMDKVKWSGVRTQHMTTPFVDEMYDLLKNTLTEYEVIICRWPEYIF VLENAIADIEKAVIESLEKQYGDVLAPLKDCIAPKKFGLKYVQKLTKRNSVGPYTVPEDLGILL NTMKRLLDVLRPRIESHLKSWSSCMPNGGNSAAIGERLSEVTVTLRAKFRNYMQAVVEKLSENN RILGEVEEQIEQTLAMVFENYKSLNESLPSGLVEDFRPPTGLAACALEPAIKLYSLLHDVLSPE AQLRLCGYFQAAARKRSRRYMLETDEYVAGNSEGIRVDLVTFTTAYQKMKSLCCNLRNEIFTDI EIHNQHILPSFVDLPNLAASIYSVELSNRLRAFLVACPPTGPSSPVADLVIATADFQKDLASWN ICPIKAGVDAKELFHLYIVLWIEDKRRTLLENCRMDKVKWSGVRTQHMTTPFVDEMYDLLKNTL TEYEVIICRWPEYIFVLENAIADIEKAVIESLEKQYGDVLAPLKDCIAPKKFGLKYVQKLTKRN SVGPYTVPEDLGILLNTMKRLLDVLRPRIESHLKSWSSCMPNGGNSAAIGERLSEVTVTLRAKF RNYMQAVVEKLSENNRILGEVEEQIEQTLAMVFENYKSLNESLPSGLVEDFRPPTGLAACALEP AIKLYSLLHDVLSPEAQLRLCGYFQAAARKRSRRYMLETDEYVAGNSEGIRVDLVTFTTAYQKM KSLCCNLRNEIFTDIEIHNQHILPSFVDLPNLAASIYSVELSNRLRAFLVACPPTGPSSPVADL VIATADFQKDLASWNICPIKAGVDAKELFHLYIVLWIEDKRRTLLENCRMDKVKWSGVRTQHMT TPFVDEMYDLLKNTLTEYEVIICRWPEYIFVLENAIADIEKAVIESLEKQYGDVLAPLKDCIAP KKFGLKYVQKLTKRNSVGPYTVPEDLGILLNTMKRLLDVLRPRIESHLKSWSSCMPNGGNSAAI GERLSEVTVTLRAKFRNYMQAVVEKLSENNRILGEVEEQIEQTLAMVFENYKSLNESLPSGLVE DFRPPTGLAACALEPAIKLYSLLHDVLSPEAQLRLCGYFQAAARKRSRRYMLETDEYVAGNSEG IRVDLVTFTTAYQKMKSLCCNLRNEIFTDIEIHNQHILPSFVDLPNLAASIYSVELSNRLRAFL VACPPTGPSSPVADLVIATADFQKDLASWNICPIKAGVDAKELFHLYIVLWIEDKRRTLLENCR MDKVKWSGVRTQHMTTPFVDEMYDLLKNTLTEYEVIICRWPEYIFVLENAIADIEKAVIESLEK QYGDVLAPLKDCIAPKKFGLKYVQKLTKRNSVGPYTVPEDLGILLNTMKRLLDVLRPRIESHLK SWSSCMPNGGNSAAIGERLSEVTVTLRAKFRNYMQAVVEKLSEN(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0760200_circ_g.8

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