Detail information of Os02g0760200_circ_g.4


General Information
CircRNA Name Os02g0760200_circ_g.4
ID in PlantcircBase osa_circ_016638
Alias NA
Organism Oryza sativa
Position chr2: 32010782-32013689  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0760200
Parent gene annotation Conserved hypothetical protein. (Os02t0760200-01);Conserved hypo
thetical protein. (Os02t0760200-02)
Parent gene strand +
Alternative splicing Os02g0760200_circ_g.2 Os02g0760200_circ_g.3 Os02g0760200_circ_g.5 Os02g0760200_circ_g.6 Os02g0760200_circ_g.7 Os02g0760200_circ_g.8 Os02g0760200_circ_g.9 Os02g0760200_circ_g.10 Os02g0760200_circ_g.11 Os02g0760200_circ_g.12 Os02g0760200_circ_g.13
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os02t0760200-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGGCTGCTTGTGCTCTAGAACCAGCTATAAAGCTTTACAGTCTTCTCCATGATGTATTATCT
CCAGAGGCTCAACTCAGATTATGCGGTTATTTCCAGagacttactcttgccaattgaggcttaa
aagtacacctgaagatgatgttgtaccgatgcagccaggatctggtgaaacacatgtcttgtat
gtagcaag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 815
Transcript exons: 32010782-32010869,32010974-32011079,32011234-32011344,32
012027-32012190,32012744-32012864,32013465-32013689
AGACTTACTCTTGCCAATTGAGGCTTAAAAGTACACCTGAAGATGATGTTGTACCGATGCAGCC
AGGATCTGGTGAAACACATGTCTTCTTCCCGGATAGCCTTGGAGATGATTTGATCATTGATGTT
TCTGATTCAAAAGGAAAGCCCTGTGGACGTGTTGTTGCTCAAGTTGCTACAATGGCAGAGGAAT
CTACTGACAAGCTTCGTTGGTGGTCAATATACCGGGAACCTGAGCATGAACTCGTAGGCCGCAT
ACAGCTATACATACACTACACAACTGCTGCAGATGAGAACAACACGAAGTATGGCTCTGTTGCA
GAAACTGTGGCTTATGATATTGTTTTGGAAGTTGCAATGAAAGCACAGCACATTCAACAACGGA
ATCTCATCTTGCATGGTTCCTGGAAATGGTTGTTGACAGAATTTGCATTGTACTATGGCGTTTC
AGATGCCTACACAAAGCTGAGGTATCTCTCTTATATCATGGATGTTGCAACCCCTACTGCTGAT
TGGCTCAATCTGGTTCATGACCTTTTGTTACCCGTACTAATGAAGACCCAAGGCACTGCTGCAT
TGAGCCATCAAGAGAACCGCATATTAGGTGAAGTTGAGGAGCAAATTGAGCAAACTTTAGCGAT
GGTATTTGAGAATTACAAGTCTCTGAATGAATCTTTGCCGTCGGGTTTAGTGGAAGATTTTAGA
CCTCCAACTGGTTTGGCTGCTTGTGCTCTAGAACCAGCTATAAAGCTTTACAGTCTTCTCCATG
ATGTATTATCTCCAGAGGCTCAACTCAGATTATGCGGTTATTTCCAG

Genomic sequence AGACTTACTCTTGCCAATTGAGGCTTAAAAGTACACCTGAAGATGATGTTGTACCGATGCAGCC
AGGATCTGGTGAAACACATGTCTTGTATGTAGCAAGACCTTTCTTTGAGCACATATATCATTGT
TTTGCCTGGAAATCTGAATATTATGAGATTAGTGAGGCTGAATATTTTTATGTAAATATTTCAG
CTTCCCGGATAGCCTTGGAGATGATTTGATCATTGATGTTTCTGATTCAAAAGGAAAGCCCTGT
GGACGTGTTGTTGCTCAAGTTGCTACAATGGCAGAGGAATCTGTATGATTTTCCAAACCAACTT
GCTACTCTCTGTTTAAGTTCTTTAAATAGAAGTTATTGTAGATTTTCATACTTGCTCTAAATGG
TTATTGTACAATCTATGACTTCTTCAAAATCCTTGTTCCTTACAGTATTTCTCAACTTTCTTGT
GTAGACTGACAAGCTTCGTTGGTGGTCAATATACCGGGAACCTGAGCATGAACTCGTAGGCCGC
ATACAGCTATACATACACTACACAACTGCTGCAGATGAGAACAACACGAAGGTACTGATTCAGT
GTTCTGCAAATTCAGGTCTTATCATCTTAGGATGTTATGTATTCATGTGAATTTAATTTATTTG
ATACCTGTTAATTGCAGCACTGTAACCTATTGCTCATTTCTCCCCCACACTCCTTTTGCTAGCT
GTCGATTTACTGAACACCTTAAATGACACGGATGATTTTCATGGATGGCATTTTTTACCATTTG
ATTGTTTCCTGTATAACATGGAAACAACAGTATATCAATCATTGATCAACTTACTTATATTTTC
CTGTCATGGTTGTCACTTAAAAAAAAGAGTGTAAAACAGCCTTTATCATGTATTTAGACTGTAG
ACTTTGTTCTTGCCAGACATATCATGATTCGACTGAAGTTTTCTTTTATTTATGTTACTATGAA
TTCCAGCATGTCAGCAAAGGAAATGTTTCCTAAATCTTCATTCTGATGGAATAACATGAAACAA
GAGTGATTTTACATTGTAGATTTGAATTTGTCTGAACAGGGTAGTCTGTTTATCAGGATCTAAG
TCATATAAACATGATTTAAAAGTATACCTTTCTTTCGTAGCTGCCTGATTCGAAATGGCCTATC
CATTTTGAGATTAAAAATGTGCTCTATTGAGTGGAAGGGATACTTGACTAATTGACATCTATTT
AATTTTCATGGCCGTGATTTTCTTTGCAGTATGGCTCTGTTGCAGAAACTGTGGCTTATGATAT
TGTTTTGGAAGTTGCAATGAAAGCACAGCACATTCAACAACGGAATCTCATCTTGCATGGTTCC
TGGAAATGGTTGTTGACAGAATTTGCATTGTACTATGGCGTTTCAGATGCCTACACAAAGCTGA
GGTATTTGGCTATTACTATAGGACCAATAACCATCACTTTTACTTAGGCTGCGTTCGTGAGCAT
GGGTTGGGAACCCTCCCTCCCATGCACGCAAAACGAAGCGACTGTTTAATGCATGATTAATTAA
GTATTAGCTAAAAAAACTTGAAAAATGGATTAATATGGTTTTTTAAAACAACTTTCATATAGAT
TTTTTTTTGGCAAAAAACACACCGTTTAGCAGTTTGAAAAGCGTGCGCGCGTAAAACGAGGGAG
GTGAGTTGGGAAAGTTGGGGAAAGAACTCAGCCTTAGCATATAGTTGTTGGCATGACGTTGTGA
CTTAACTTGCTTAAGTCTTGCCATATGTTCCCTTTTCTTGATCTGTCTAGATGCAAGAAATATT
TACAATACCTGATGAGATTATTTAAGTCTGACTCACAAGGCTGTTCTAGCAGTTGATTAGAACC
TTTAAATTTTTCTATCATATCATAATTTTTTTTCAAATATCTGTCATCTTCCCTCATTTCCTTT
CCTTTGCTATTGCTGAGTGCTAGCCCTTGACTCCTTGTTCAGGTATCTCTCTTATATCATGGAT
GTTGCAACCCCTACTGCTGATTGGCTCAATCTGGTTCATGACCTTTTGTTACCCGTACTAATGA
AGACCCAAGGCACTGCTGCATTGAGCCATCAAGAGGTACTGTTCTTTTCTTCAGATATTTCCCC
TGGAACAGCAAGTTCTGTTGCACATCTGATAGCAAATGCCATGATTTAATGTTAATGCTATATA
GTATATTATCCAAGAAATTCCCTTCCTTACACCCAATAATGTGTGGGAGCTTTCAGCACTGGGT
GTACCCTTGTTTGTGTTGATGTTATGTTATCCTTGTGTGCAATAGCAGTACTGCACCTATATGC
TAACTGTTTACAAATGAATGTGTATTTTATATGTTCTAATATTAAAAGAAATGCTAGAATAATT
ATCTTCAGATGTAAAACTAAAGAAATTTGTATCAACCGACTATCTATATGTAAGCACATATACG
GTATGGAATTATTTTAAATCTTACAAATGGTACACAATTGTATACATGTATCAATCTATAGAAG
ATCACCATAGAGCACACCAACACCATCACCAACTCTTCTTATGTTGTAGAGATAACAGGCAAAT
TAATCTAGTTACGTGGAATAAATTATATTATGCTTTATTGGCTTATTTTGTTTTTTCTTTCTGA
AATTGCTTATGTAACATTAACATCTTAACTGTGCTGCTTCACTGGAATTGTATCATCAGAACCG
CATATTAGGTGAAGTTGAGGAGCAAATTGAGCAAACTTTAGCGATGGTATTTGAGAATTACAAG
TCTCTGAATGAATCTTTGCCGTCGGGTTTAGTGGAAGATTTTAGACCTCCAACTGGTTTGGCTG
CTTGTGCTCTAGAACCAGCTATAAAGCTTTACAGTCTTCTCCATGATGTATTATCTCCAGAGGC
TCAACTCAGATTATGCGGTTATTTCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.221910408
Functional Information
Coding potential Y
Potential coding position 32013641-32010806(+)
32013675-32010799(+)
32010839-32010799(+)
32010866-32013682(-)
Potential amino acid sequence MMYYLQRLNSDYAVISRDLLLPIEA*(+)
MRLFPETYSCQLRLKSTPEDDVVPMQPGSGETHVFFPDSLGDDLIIDVSDSKGKPCGRVVAQVA
TMAEESTDKLRWWSIYREPEHELVGRIQLYIHYTTAADENNTKYGSVAETVAYDIVLEVAMKAQ
HIQQRNLILHGSWKWLLTEFALYYGVSDAYTKLRYLSYIMDVATPTADWLNLVHDLLLPVLMKT
QGTAALSHQENRILGEVEEQIEQTLAMVFENYKSLNESLPSGLVEDFRPPTGLAACALEPAIKL
YSLLHDVLSPEAQLRLCGYFQRLTLAN*(+)
MQPGSGETHVFFPDSLGDDLIIDVSDSKGKPCGRVVAQVATMAEESTDKLRWWSIYREPEHELV
GRIQLYIHYTTAADENNTKYGSVAETVAYDIVLEVAMKAQHIQQRNLILHGSWKWLLTEFALYY
GVSDAYTKLRYLSYIMDVATPTADWLNLVHDLLLPVLMKTQGTAALSHQENRILGEVEEQIEQT
LAMVFENYKSLNESLPSGLVEDFRPPTGLAACALEPAIKLYSLLHDVLSPEAQLRLCGYFQRLT
LAN*(+)
MCFTRSWLHRYNIIFRCTFKPQLARVSLWK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017