Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os06g0195600_circ_g.7 |
| ID in PlantcircBase | osa_circ_030067 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr6: 4850186-4852223 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
| Parent gene | Os06g0195600 |
| Parent gene annotation |
Similar to SAC domain protein 3. (Os06t0195600-01) |
| Parent gene strand | - |
| Alternative splicing | Os06g0195600_circ_g.1 Os06g0195600_circ_g.2 Os06g0195600_circ_g.3 Os06g0195600_circ_g.4 Os06g0195600_circ_g.5 Os06g0195600_circ_g.6 Os06g0195600_circ_g.8 Os06g0195600_circ_g.9 |
| Support reads | 3 |
| Tissues | root, seed |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os06t0195600-01:6 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | osi_circ_006578* |
| PMCS | 0.254740215 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
4851901-4850188(-) |
| Potential amino acid sequence |
MLIITEQRKIGAIFGHPVYQVTRTAMIELSNSESRAKFLNSKDEDRYKKLLQTIDLRKDFFFSH SYNIMRSFQKNFNDPKEGWDLYDTMFVWNEFLTRGVRNILKSTIWTVALVYGFFKQDKLAISGK DIMLTLVARRSRHYAGTRYLKRGVNDEGSVANDVETEQIIFEDMLGPKQISSVVQNRGSIPLFW SQETSKLNLKPDIILHEKDKNYEATRLHFENLRIRYGNPIIILNLIKKFYILGTNTDKTSWKLL KIDRIEPSELNIDESSTVYSHSGYLDLLKVLDEDHRSTGGVKFVTKCFGIIGFIKFLGPYYMLI ITEQRKIGAIFGHPVYQVTRTAMIELSNSESRAKFLNSKDEDRYKKLLQTIDLRKDFFFSHSYN IMRSFQKNFNDPKEGWDLYDTMFVWNEFLTRGVRNILKSTIWTVALVYGFFKQDKLAISGKDIM LTLVARRSRHYAGTRYLKRGVNDEGSVANDVETEQIIFEDMLGPKQISSVVQNRGSIPLFWSQE TSKLNLKPDIILHEKDKNYEATRLHFENLRIRYGNPIIILNLIKKFYILGTNTDKTSWKLLKID RIEPSELNIDESSTVYSHSGYLDLLKVLDEDHRSTGGVKFVTKCFGIIGFIKFLGPYYMLIITE QRKIGAIFGHPVYQVTRTAMIELSNSESRAKFLNSKDEDRYKKLLQTIDLRKDFFFSHSYNIMR SFQKNFNDPKEGWDLYDTMFVWNEFLTRGVRNILKSTIWTVALVYGFFKQDKLAISGKDIMLTL VARRSRHYAGTRYLKRGVNDEGSVANDVETEQIIFEDMLGPKQISSVVQNRGSIPLFWSQETSK LNLKPDIILHEKDKNYEATRLHFENLRIRYGNPIIILNLIKKFYILGTNTDKTSWKLLKIDRIE PSELNIDESSTVYSHSGYLDLLKVLDEDHRSTGGVKFVTKCFGIIGFIKFLGPYYMLIITEQRK IGAIFGHPVYQVTRTAMIELSNSESRAKFLNSKDEDRYKKLLQTIDLRKDFFFSHSYNIMRSFQ KNFNDPKEGWDLYDTMFVWNEFLTRGVRNILKSTIWTVALVYGFFKQDKLAISGKDIMLTLVAR RSRHYAGTRYLKRGVNDEGSVANDVETEQIIFEDMLGPKQISSVVQNRGSIPLFWSQETSKLNL KPDIILHEKDKNYEATRLHFENLRIRYGNPIIILNLIK(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |