Detail information of Os06g0195600_circ_g.7


General Information
CircRNA Name Os06g0195600_circ_g.7
ID in PlantcircBase osa_circ_030067
Alias NA
Organism Oryza sativa
Position chr6: 4850186-4852223  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene Os06g0195600
Parent gene annotation Similar to SAC domain protein 3. (Os06t0195600-01)
Parent gene strand -
Alternative splicing Os06g0195600_circ_g.1 Os06g0195600_circ_g.2 Os06g0195600_circ_g.3 Os06g0195600_circ_g.4 Os06g0195600_circ_g.5 Os06g0195600_circ_g.6 Os06g0195600_circ_g.8 Os06g0195600_circ_g.9
Support reads 3
Tissues root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0195600-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGAACTCTCATCAATGTTGAGCTCTGATGGTTCGATTCTATCAATCTTGAGTAGTTTCCATGA
TGTTTTGTCAGTGTTAGTTCCGAGAATATAGAATTTcttaatcaagtttaggatgattatagga
tttccatatcttatcctaagattttcaaaatgaagtctggtagcttcataattcttgtcctttt
catgcact
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 951
Transcript exons: 4850186-4850283,4850355-4850536,4850647-4850723,4851266-
4851488,4851763-4851928,4852019-4852223
CTTAATCAAGTTTAGGATGATTATAGGATTTCCATATCTTATCCTAAGATTTTCAAAATGAAGT
CTGGTAGCTTCATAATTCTTGTCCTTTTCATGCAATATGATATCAGGCTTAAGATTCAGCTTGG
ATGTCTCCTGAGACCAGAATAGGGGAATGGAACCTCTGTTCTGCACAACAGAGCTTATTTGCTT
TGGTCCAAGCATGTCCTCAAAAATAATTTGCTCAGTCTCAACATCATTTGCTACACTACCCTCG
TCATTCACACCTCTCTTTAAATACCTGGTGCCAGCATAATGCCTCGAGCGTCTAGCAACAAGCG
TCAGCATAATGTCTTTCCCAGATATTGCGAGTTTATCCTGTTTAAAAAAGCCATAGACCAACGC
AACAGTCCATATGGTACTTTTTAGAATGTTGCGAACCCCTCGTGTTAGAAACTCATTCCATACA
AACATTGTGTCATACAGGTCCCATCCTTCCTTTGGATCATTAAAATTCTTCTGGAAACTTCTCA
TGATATTATACGAGTGGCTAAAAAAGAAGTCCTTTCTAAGATCAATTGTCTGCAAGAGCTTCTT
GTATCTGTCTTCATCCTTGGAATTTAGAAATTTTGCCCTCGACTCGGAATTTGACAGCTCAATC
ATTGCAGTCCTAGTAACTTGGTAAACTGGATGGCCAAATATAGCCCCAATTTTTCTCTGCTCGG
TGATGATTAGCATGTAATAAGGTCCGAGGAACTTAATGAAACCGATGATTCCAAAACATTTTGT
AACAAATTTTACTCCACCAGTTGACCTGTGGTCTTCATCAAGAACCTTTAGCAGATCAAGATAT
CCACTATGTGAGTACACAGTTGAACTCTCATCAATGTTGAGCTCTGATGGTTCGATTCTATCAA
TCTTGAGTAGTTTCCATGATGTTTTGTCAGTGTTAGTTCCGAGAATATAGAATTT

Genomic sequence CTTAATCAAGTTTAGGATGATTATAGGATTTCCATATCTTATCCTAAGATTTTCAAAATGAAGT
CTGGTAGCTTCATAATTCTTGTCCTTTTCATGCACTGAGAAAAATAAACAAATCAAAATAATTG
AATAATACTGCATACATAAAAAAAATGGATTCAATGCTTACATATGATATCAGGCTTAAGATTC
AGCTTGGATGTCTCCTGAGACCAGAATAGGGGAATGGAACCTCTGTTCTGCACAACAGAGCTTA
TTTGCTTTGGTCCAAGCATGTCCTCAAAAATAATTTGCTCAGTCTCAACATCATTTGCTACACT
ACCCTCGTCATTCACACCTCTCTTTAAATACCTGTTCAACAAAATAACAAAATCAAAACAAGAA
TGCCATAATCCACATGCATTTCTTAGTAACGTCAACCCAAAACATGCAAAGCAAATTACTAGGA
AAAATATATATACCTGGTGCCAGCATAATGCCTCGAGCGTCTAGCAACAAGCGTCAGCATAATG
TCTTTCCCAGATATTGCGAGTTTATCCTTGATAAAAATGGTAATTAGGTTATATTATTCCAAAA
TTATGTCAGAAATAAAAAAAATTGCAATATCCAAGAGAAATAAATAATTTAGACAAAAAGGAAG
TTCACGTGGCAATGGATACACTGTCAGTTTTTCTTTAGAGAAAGGTTTCACATAAGAAGAAATG
TCTCAGCTCTACAAGATAAGTCCATGTATAATTACAAGCATATCCCATTATGATGTTCTCCTAT
GTACATTTTTTTCCATACAGCATGATTTTACTGATAAAGATGGAAAGACGCTAATAACCTATGA
ATGTTACTTGTTTACACAAGCAAATAAAAATCATGAGTGTAGCTCACTAGTAAAACAAATGAAT
AATTAAGCAGGAAATTGACATCTCAACATCAATAAGACCTCGAGGATAGGCTCTTGCTAATCTG
CGCAATTGATAGTCTAGTATTTCTCTACGGAAAGAAGGGTCTTCATTTTGTTGCGCTCTACCAT
GTTTCACTAGTCCTATTTAATGAGAACAATAAAAACACTAATTTATGGGTATGTACCTGTTTAA
AAAAGCCATAGACCAACGCAACAGTCCATATGGTACTTTTTAGAATGTTGCGAACCCCTCGTGT
TAGAAACTCATTCCATACAAACATTGTGTCATACAGGTCCCATCCTTCCTTTGGATCATTAAAA
TTCTTCTGGAAACTTCTCATGATATTATACGAGTGGCTAAAAAAGAAGTCCTTTCTAAGATCAA
TTGTCTGCAAGAGCTTCTTGTATCTGCACATCAATAAAGGTTAGATTATCATGAATACACAGTG
TAGTCATTCGACATGGGAAATAAATATGTAGCTTTGAAGTTTTATAGAAAAAGAACTAAATGTT
CCATGGTCATAAAATTTGTAAGGTAAACAGAAGGGAAAAAGAAAAACATGTAGGCCTTGTTTGG
ATGGGCCTCAATCCAGCTGGCCAGCCTACGGGAATGTACTTGGAAACCAGGCTGCCAAACAAGG
CTATAAGGTAATTGGAGGGCATAAAATGTGATGCAAGATACCTGTCTTCATCCTTGGAATTTAG
AAATTTTGCCCTCGACTCGGAATTTGACAGCTCAATCATTGCAGTCCTAGTAACTTGGTAAACT
GGATGGCCAAATATAGCCCCAATTTTTCTCTGCTCGGTGATGATTAGCATGTAATAAGGTCCGA
GGAACTTAATGAAACCTGAACAGAGAAATCATCATGAATGCATTGTTTTTTTATTTGTCATATG
CTTTGCATTATGAAATGGTTATAGAAAGATGGATAACTTACCGATGATTCCAAAACATTTTGTA
ACAAATTTTACTCCACCAGTTGACCTGTGGTCTTCATCAAGAACCTTTAGCAGATCAAGATATC
CACTATGTGAGTACACAGTTGAACTCTCATCAATGTTGAGCTCTGATGGTTCGATTCTATCAAT
CTTGAGTAGTTTCCATGATGTTTTGTCAGTGTTAGTTCCGAGAATATAGAATTT
Conservation Information
Conserved circRNAs osi_circ_006578*
PMCS 0.254740215
Functional Information
Coding potential Y
Potential coding position 4851901-4850188(-)
Potential amino acid sequence MLIITEQRKIGAIFGHPVYQVTRTAMIELSNSESRAKFLNSKDEDRYKKLLQTIDLRKDFFFSH
SYNIMRSFQKNFNDPKEGWDLYDTMFVWNEFLTRGVRNILKSTIWTVALVYGFFKQDKLAISGK
DIMLTLVARRSRHYAGTRYLKRGVNDEGSVANDVETEQIIFEDMLGPKQISSVVQNRGSIPLFW
SQETSKLNLKPDIILHEKDKNYEATRLHFENLRIRYGNPIIILNLIKKFYILGTNTDKTSWKLL
KIDRIEPSELNIDESSTVYSHSGYLDLLKVLDEDHRSTGGVKFVTKCFGIIGFIKFLGPYYMLI
ITEQRKIGAIFGHPVYQVTRTAMIELSNSESRAKFLNSKDEDRYKKLLQTIDLRKDFFFSHSYN
IMRSFQKNFNDPKEGWDLYDTMFVWNEFLTRGVRNILKSTIWTVALVYGFFKQDKLAISGKDIM
LTLVARRSRHYAGTRYLKRGVNDEGSVANDVETEQIIFEDMLGPKQISSVVQNRGSIPLFWSQE
TSKLNLKPDIILHEKDKNYEATRLHFENLRIRYGNPIIILNLIKKFYILGTNTDKTSWKLLKID
RIEPSELNIDESSTVYSHSGYLDLLKVLDEDHRSTGGVKFVTKCFGIIGFIKFLGPYYMLIITE
QRKIGAIFGHPVYQVTRTAMIELSNSESRAKFLNSKDEDRYKKLLQTIDLRKDFFFSHSYNIMR
SFQKNFNDPKEGWDLYDTMFVWNEFLTRGVRNILKSTIWTVALVYGFFKQDKLAISGKDIMLTL
VARRSRHYAGTRYLKRGVNDEGSVANDVETEQIIFEDMLGPKQISSVVQNRGSIPLFWSQETSK
LNLKPDIILHEKDKNYEATRLHFENLRIRYGNPIIILNLIKKFYILGTNTDKTSWKLLKIDRIE
PSELNIDESSTVYSHSGYLDLLKVLDEDHRSTGGVKFVTKCFGIIGFIKFLGPYYMLIITEQRK
IGAIFGHPVYQVTRTAMIELSNSESRAKFLNSKDEDRYKKLLQTIDLRKDFFFSHSYNIMRSFQ
KNFNDPKEGWDLYDTMFVWNEFLTRGVRNILKSTIWTVALVYGFFKQDKLAISGKDIMLTLVAR
RSRHYAGTRYLKRGVNDEGSVANDVETEQIIFEDMLGPKQISSVVQNRGSIPLFWSQETSKLNL
KPDIILHEKDKNYEATRLHFENLRIRYGNPIIILNLIK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017