Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os06g0195600_circ_g.7 |
ID in PlantcircBase | osa_circ_030067 |
Alias | NA |
Organism | Oryza sativa |
Position | chr6: 4850186-4852223 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
Parent gene | Os06g0195600 |
Parent gene annotation |
Similar to SAC domain protein 3. (Os06t0195600-01) |
Parent gene strand | - |
Alternative splicing | Os06g0195600_circ_g.1 Os06g0195600_circ_g.2 Os06g0195600_circ_g.3 Os06g0195600_circ_g.4 Os06g0195600_circ_g.5 Os06g0195600_circ_g.6 Os06g0195600_circ_g.8 Os06g0195600_circ_g.9 |
Support reads | 3 |
Tissues | root, seed |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os06t0195600-01:6 |
Conservation Information | |
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Conserved circRNAs | osi_circ_006578* |
PMCS | 0.254740215 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4851901-4850188(-) |
Potential amino acid sequence |
MLIITEQRKIGAIFGHPVYQVTRTAMIELSNSESRAKFLNSKDEDRYKKLLQTIDLRKDFFFSH SYNIMRSFQKNFNDPKEGWDLYDTMFVWNEFLTRGVRNILKSTIWTVALVYGFFKQDKLAISGK DIMLTLVARRSRHYAGTRYLKRGVNDEGSVANDVETEQIIFEDMLGPKQISSVVQNRGSIPLFW SQETSKLNLKPDIILHEKDKNYEATRLHFENLRIRYGNPIIILNLIKKFYILGTNTDKTSWKLL KIDRIEPSELNIDESSTVYSHSGYLDLLKVLDEDHRSTGGVKFVTKCFGIIGFIKFLGPYYMLI ITEQRKIGAIFGHPVYQVTRTAMIELSNSESRAKFLNSKDEDRYKKLLQTIDLRKDFFFSHSYN IMRSFQKNFNDPKEGWDLYDTMFVWNEFLTRGVRNILKSTIWTVALVYGFFKQDKLAISGKDIM LTLVARRSRHYAGTRYLKRGVNDEGSVANDVETEQIIFEDMLGPKQISSVVQNRGSIPLFWSQE TSKLNLKPDIILHEKDKNYEATRLHFENLRIRYGNPIIILNLIKKFYILGTNTDKTSWKLLKID RIEPSELNIDESSTVYSHSGYLDLLKVLDEDHRSTGGVKFVTKCFGIIGFIKFLGPYYMLIITE QRKIGAIFGHPVYQVTRTAMIELSNSESRAKFLNSKDEDRYKKLLQTIDLRKDFFFSHSYNIMR SFQKNFNDPKEGWDLYDTMFVWNEFLTRGVRNILKSTIWTVALVYGFFKQDKLAISGKDIMLTL VARRSRHYAGTRYLKRGVNDEGSVANDVETEQIIFEDMLGPKQISSVVQNRGSIPLFWSQETSK LNLKPDIILHEKDKNYEATRLHFENLRIRYGNPIIILNLIKKFYILGTNTDKTSWKLLKIDRIE PSELNIDESSTVYSHSGYLDLLKVLDEDHRSTGGVKFVTKCFGIIGFIKFLGPYYMLIITEQRK IGAIFGHPVYQVTRTAMIELSNSESRAKFLNSKDEDRYKKLLQTIDLRKDFFFSHSYNIMRSFQ KNFNDPKEGWDLYDTMFVWNEFLTRGVRNILKSTIWTVALVYGFFKQDKLAISGKDIMLTLVAR RSRHYAGTRYLKRGVNDEGSVANDVETEQIIFEDMLGPKQISSVVQNRGSIPLFWSQETSKLNL KPDIILHEKDKNYEATRLHFENLRIRYGNPIIILNLIK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |