Detail information of Os06g0195600_circ_g.3


General Information
CircRNA Name Os06g0195600_circ_g.3
ID in PlantcircBase osa_circ_030063
Alias NA
Organism Oryza sativa
Position chr6: 4845977-4848092  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0195600
Parent gene annotation Similar to SAC domain protein 3. (Os06t0195600-01)
Parent gene strand -
Alternative splicing Os06g0195600_circ_g.1 Os06g0195600_circ_g.2 Os06g0195600_circ_g.4 Os06g0195600_circ_g.5 Os06g0195600_circ_g.6 Os06g0195600_circ_g.7 Os06g0195600_circ_g.8 Os06g0195600_circ_g.9
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0195600-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGCATCCATATATGCATTACTGTAGTATCTTTGCAGTGTCCTGAAGAACTCTTGCGACTGGAT
AGCGAACTTTAAGTGTCCTCTCTTTGCAGAGAATATctttcgttgtctgaagatgaaagccagt
caatgtccaggaaatttgaatcaccagaaccattgcagtaatcaagctcacagcttacatgctt
aacatgag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCGTTGTCTGAAGATGAAAGCCAGTCAATGTCCAGGAAATTTGAATCACCAGAACCATTGC
AGTAATCAAGCTCACAGCTTACATGCTTAACATGAGGTTCCGTGGGAGTATACCTAAAGTATTT
TTCAAGAGAGAACAGAGATCAATATGCTAGTGCCAAATATTGTTCTGAGGAACACCACACCTAA
ATAATTTAGTGTGAGTTGCTATCTATTAGCAGAATAAGGACAAGATTGAGTCTGATTTTGAAGA
ACAGAAACCAACCTTGATTTTGACACTGTAACTGTATTATCAGGTGCTGATGAAATTTCGTTTA
TTGCATCAGAAGAACTGTTTGGAGATTGAAGCTCACTTTTAGAATCAATAAATGATGACTTTAA
CACTCCATTTCGACCATTGCTGGACATGGATGCGTTGCTTTTCCGAAGAATGCTGCCATCTGAC
CTTGCCCTTTTCATCAATTTACTGAGACAAATATATTTGTCAGATAATTCATAAAATTTTGTTA
TTTTGCAAAACACATGCACAAATAAAGTAAACAAAGAAACAAAAAGCCACGAAATGGAGATGGC
CCTTTATCTTGTCCTTCATTCTTTACTGCGGAACACCAAGAAATCAGAATAACATGTACAGCAT
TCCAAATTTAAATTCGTTATGGAAACTTAGCAAGAATATTTCACGTTACATTTGGCGATTGAGG
AAGGGAAACCAAAATCCCCCCAGATAGTGTAGGGTTGGAGCCCATAACCTATTGATGTGGAACT
TCTTTGGGGTCTCATGTAAACTACTGGACCCTTTTTTCTGCCTTCCTGGTTCCTAATGCCAGTA
GCATCAACAGTATGTCGTAAGAGAGTGGCTATCAGTATTCAGACCTGGCCTGGCCATTAATCCA
GACAAGGGCCCAGGTCACTGACCGGTCAGAGAGCATTGGGTCACGGTTAGAAGATTTTGTATTA
GATTTCAATGTACTTATCAGAAAATACTTTAAATTCGTCAAGGCAAAATTATCCATAATATCAA
AGAAGATAAGTCAATGACATCACGGGCTTGAAGATCTATGCAAGAATATAGCACTGTAGTACAA
TTGCATCACCTTAAGATCTCTAGCTGATAAATCTTAAGAAAAGCTAGCAGCTTGTACTAGATGA
TGATTCAAGGCATGCAGAAAACAATGATAAATATTGAAGACAAGCTCACAAGCCAGCCAATCCA
CAACACTGTATTGTTTAAGTTTGCAGCCCACGATGGTCAGCTGCCAAGCAGCTTCTACCACATA
GCTTGTGCCAGACTGCCAGGATGGAGGATCAATGTCCTATAGACAAAAGCAGATGTGATGGGAG
GCATTTTGGAGCAGCAGAGGGAATGGCAAGATGACGGTGATTTTTTTACATCAAGCCTGCCAAA
GATGCCTTATGGCTTTGTCTTTACATTTCAAGGGTTTATTAGCATCACGGATAAAACCCAGCTA
ATCACATGAAATAGCCAAGTCAAACTTTTCTGTGAGCCCACTTGTGTCATTGGTTTTCAAACTG
TGCCCAGGCACCGAGCCAAATATAGCTTCTTGGTCCTGACTTTTCCAGTTCACCTGCTAGGCGG
GATGGCTGGGTCTGATAATTACGATACATCTAGACACTAACGAGTGGCTAAAAAGATGGAATGC
ATAGCTCACATTGGAACCAAAGCAAGGCTGTCACACTGCTCATGTAGTTCAAATGATAAGAAAA
AGCTTCGGGTTACATGGTCATAATTAACCACACATGTTCAAGTGTAGTAATTTTACCTTGCATT
CTCACCAAGGACACCCTCCCCAGCAACAGGTTCTAACTCCCAAAGTGCAGGTTCACCTTCACAT
GGCTGGAAGTATCCTAAAAATCTAGAAATTTAAGAAGGTAAAAGCACCAAGTAATAAAAACTTA
GTACATAATAATTCCCTATTTAAACTTTAGAGGGCATAAAGATATGTACAGTGAACAGCTTGAT
TAAAACGTACAAGTTTATTGCTGCTTGTTTGTAAGCATCCATATATGCATTACTGTAGTATCTT
TGCAGTGTCCTGAAGAACTCTTGCGACTGGATAGCGAACTTTAAGTGTCCTCTCTTTGCAGAGA
ATAT
Conservation Information
Conserved circRNAs osi_circ_016754
PMCS 0.213382926
Functional Information
Coding potential Y
Potential coding position 4848004-4848067(-)
4846039-4848012(-)
Potential amino acid sequence MDAYKQAAINLFLGYFQPCEGEPALWELEPVAGEGVLGENASKLMKRARSDGSILRKSNASMSS
NGRNGVLKSSFIDSKSELQSPNSSSDAINEISSAPDNTVTVSKSRYTPTEPHVKHVSCELDYCN
GSGDSNFLDIDWLSSSDNERYSLQREDT*(-)
MVLVIQISWTLTGFHLQTTKDILCKERTLKVRYPVARVLQDTAKILQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017