Detail information of Os06g0195600_circ_g.9


General Information
CircRNA Name Os06g0195600_circ_g.9
ID in PlantcircBase osa_circ_030069
Alias Os_ciR10732
Organism Oryza sativa
Position chr6: 4851524-4851762  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os06g0195600
Parent gene annotation Similar to SAC domain protein 3. (Os06t0195600-01)
Parent gene strand -
Alternative splicing Os06g0195600_circ_g.1 Os06g0195600_circ_g.2 Os06g0195600_circ_g.3 Os06g0195600_circ_g.4 Os06g0195600_circ_g.5 Os06g0195600_circ_g.6 Os06g0195600_circ_g.7 Os06g0195600_circ_g.8
Support reads 2/1
Tissues root/root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCAATCCAGCTGGCCAGCCTACGGGAATGTACTTGGAAACCAGGCTGCCAAACAAGGCTATA
AGGTAATTGGAGGGCATAAAATGTGATGCAAGATACacagtgtagtcattcgacatgggaaata
aatatgtagctttgaagttttatagaaaaagaactaaatgttccatggtcataaaatttgtaag
gtaaacag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACAGTGTAGTCATTCGACATGGGAAATAAATATGTAGCTTTGAAGTTTTATAGAAAAAGAACTA
AATGTTCCATGGTCATAAAATTTGTAAGGTAAACAGAAGGGAAAAAGAAAAACATGTAGGCCTT
GTTTGGATGGGCCTCAATCCAGCTGGCCAGCCTACGGGAATGTACTTGGAAACCAGGCTGCCAA
ACAAGGCTATAAGGTAATTGGAGGGCATAAAATGTGATGCAAGATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.371590156
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017