Plant Circular RNA Database

Detail information of Os06g0195600_circ_g.8

			
						 General Information
					
						CircRNA Name
						Os06g0195600_circ_g.8
					
						ID in PlantcircBase
						osa_circ_030068
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 4850355-4852223  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0195600						
					
						Parent gene annotation
						
							Similar to SAC domain protein 3. (Os06t0195600-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0195600_circ_g.1 Os06g0195600_circ_g.2 Os06g0195600_circ_g.3 Os06g0195600_circ_g.4 Os06g0195600_circ_g.5 Os06g0195600_circ_g.6 Os06g0195600_circ_g.7 Os06g0195600_circ_g.9 						
					
						Support reads
						1
					
						Tissues
						shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0195600-01:5

General Information
CircRNA Name	Os06g0195600_circ_g.8
ID in PlantcircBase	osa_circ_030068
Alias	NA
Organism	Oryza sativa
Position	chr6: 4850355-4852223 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0195600
Parent gene annotation	Similar to SAC domain protein 3. (Os06t0195600-01)
Parent gene strand	-
Alternative splicing	Os06g0195600_circ_g.1 Os06g0195600_circ_g.2 Os06g0195600_circ_g.3 Os06g0195600_circ_g.4 Os06g0195600_circ_g.5 Os06g0195600_circ_g.6 Os06g0195600_circ_g.7 Os06g0195600_circ_g.9
Support reads	1
Tissues	shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0195600-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTGAACTCTCATCAATGTTGAGCTCTGATGGTTCGATTCTATCAATCTTGAGTAGTTTCCATGA
TGTTTTGTCAGTGTTAGTTCCGAGAATATAGAATTTatatgatatcaggcttaagattcagctt
ggatgtctcctgagaccagaataggggaatggaacctctgttctgcacaacagagcttatttgc
tttggtcc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 853
Transcript exons: 4850355-4850536,4850647-4850723,4851266-4851488,4851763-
4851928,4852019-4852223
ATATGATATCAGGCTTAAGATTCAGCTTGGATGTCTCCTGAGACCAGAATAGGGGAATGGAACC
TCTGTTCTGCACAACAGAGCTTATTTGCTTTGGTCCAAGCATGTCCTCAAAAATAATTTGCTCA
GTCTCAACATCATTTGCTACACTACCCTCGTCATTCACACCTCTCTTTAAATACCTGGTGCCAG
CATAATGCCTCGAGCGTCTAGCAACAAGCGTCAGCATAATGTCTTTCCCAGATATTGCGAGTTT
ATCCTGTTTAAAAAAGCCATAGACCAACGCAACAGTCCATATGGTACTTTTTAGAATGTTGCGA
ACCCCTCGTGTTAGAAACTCATTCCATACAAACATTGTGTCATACAGGTCCCATCCTTCCTTTG
GATCATTAAAATTCTTCTGGAAACTTCTCATGATATTATACGAGTGGCTAAAAAAGAAGTCCTT
TCTAAGATCAATTGTCTGCAAGAGCTTCTTGTATCTGTCTTCATCCTTGGAATTTAGAAATTTT
GCCCTCGACTCGGAATTTGACAGCTCAATCATTGCAGTCCTAGTAACTTGGTAAACTGGATGGC
CAAATATAGCCCCAATTTTTCTCTGCTCGGTGATGATTAGCATGTAATAAGGTCCGAGGAACTT
AATGAAACCGATGATTCCAAAACATTTTGTAACAAATTTTACTCCACCAGTTGACCTGTGGTCT
TCATCAAGAACCTTTAGCAGATCAAGATATCCACTATGTGAGTACACAGTTGAACTCTCATCAA
TGTTGAGCTCTGATGGTTCGATTCTATCAATCTTGAGTAGTTTCCATGATGTTTTGTCAGTGTT
AGTTCCGAGAATATAGAATTT
						
					

						Genomic sequence
						
							ATATGATATCAGGCTTAAGATTCAGCTTGGATGTCTCCTGAGACCAGAATAGGGGAATGGAACC
TCTGTTCTGCACAACAGAGCTTATTTGCTTTGGTCCAAGCATGTCCTCAAAAATAATTTGCTCA
GTCTCAACATCATTTGCTACACTACCCTCGTCATTCACACCTCTCTTTAAATACCTGTTCAACA
AAATAACAAAATCAAAACAAGAATGCCATAATCCACATGCATTTCTTAGTAACGTCAACCCAAA
ACATGCAAAGCAAATTACTAGGAAAAATATATATACCTGGTGCCAGCATAATGCCTCGAGCGTC
TAGCAACAAGCGTCAGCATAATGTCTTTCCCAGATATTGCGAGTTTATCCTTGATAAAAATGGT
AATTAGGTTATATTATTCCAAAATTATGTCAGAAATAAAAAAAATTGCAATATCCAAGAGAAAT
AAATAATTTAGACAAAAAGGAAGTTCACGTGGCAATGGATACACTGTCAGTTTTTCTTTAGAGA
AAGGTTTCACATAAGAAGAAATGTCTCAGCTCTACAAGATAAGTCCATGTATAATTACAAGCAT
ATCCCATTATGATGTTCTCCTATGTACATTTTTTTCCATACAGCATGATTTTACTGATAAAGAT
GGAAAGACGCTAATAACCTATGAATGTTACTTGTTTACACAAGCAAATAAAAATCATGAGTGTA
GCTCACTAGTAAAACAAATGAATAATTAAGCAGGAAATTGACATCTCAACATCAATAAGACCTC
GAGGATAGGCTCTTGCTAATCTGCGCAATTGATAGTCTAGTATTTCTCTACGGAAAGAAGGGTC
TTCATTTTGTTGCGCTCTACCATGTTTCACTAGTCCTATTTAATGAGAACAATAAAAACACTAA
TTTATGGGTATGTACCTGTTTAAAAAAGCCATAGACCAACGCAACAGTCCATATGGTACTTTTT
AGAATGTTGCGAACCCCTCGTGTTAGAAACTCATTCCATACAAACATTGTGTCATACAGGTCCC
ATCCTTCCTTTGGATCATTAAAATTCTTCTGGAAACTTCTCATGATATTATACGAGTGGCTAAA
AAAGAAGTCCTTTCTAAGATCAATTGTCTGCAAGAGCTTCTTGTATCTGCACATCAATAAAGGT
TAGATTATCATGAATACACAGTGTAGTCATTCGACATGGGAAATAAATATGTAGCTTTGAAGTT
TTATAGAAAAAGAACTAAATGTTCCATGGTCATAAAATTTGTAAGGTAAACAGAAGGGAAAAAG
AAAAACATGTAGGCCTTGTTTGGATGGGCCTCAATCCAGCTGGCCAGCCTACGGGAATGTACTT
GGAAACCAGGCTGCCAAACAAGGCTATAAGGTAATTGGAGGGCATAAAATGTGATGCAAGATAC
CTGTCTTCATCCTTGGAATTTAGAAATTTTGCCCTCGACTCGGAATTTGACAGCTCAATCATTG
CAGTCCTAGTAACTTGGTAAACTGGATGGCCAAATATAGCCCCAATTTTTCTCTGCTCGGTGAT
GATTAGCATGTAATAAGGTCCGAGGAACTTAATGAAACCTGAACAGAGAAATCATCATGAATGC
ATTGTTTTTTTATTTGTCATATGCTTTGCATTATGAAATGGTTATAGAAAGATGGATAACTTAC
CGATGATTCCAAAACATTTTGTAACAAATTTTACTCCACCAGTTGACCTGTGGTCTTCATCAAG
AACCTTTAGCAGATCAAGATATCCACTATGTGAGTACACAGTTGAACTCTCATCAATGTTGAGC
TCTGATGGTTCGATTCTATCAATCTTGAGTAGTTTCCATGATGTTTTGTCAGTGTTAGTTCCGA
GAATATAGAATTT
						
					

			
		

Sequences
Splice junction sequence	TTGAACTCTCATCAATGTTGAGCTCTGATGGTTCGATTCTATCAATCTTGAGTAGTTTCCATGA TGTTTTGTCAGTGTTAGTTCCGAGAATATAGAATTTatatgatatcaggcttaagattcagctt ggatgtctcctgagaccagaataggggaatggaacctctgttctgcacaacagagcttatttgc tttggtcc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 853 Transcript exons: 4850355-4850536,4850647-4850723,4851266-4851488,4851763- 4851928,4852019-4852223 ATATGATATCAGGCTTAAGATTCAGCTTGGATGTCTCCTGAGACCAGAATAGGGGAATGGAACC TCTGTTCTGCACAACAGAGCTTATTTGCTTTGGTCCAAGCATGTCCTCAAAAATAATTTGCTCA GTCTCAACATCATTTGCTACACTACCCTCGTCATTCACACCTCTCTTTAAATACCTGGTGCCAG CATAATGCCTCGAGCGTCTAGCAACAAGCGTCAGCATAATGTCTTTCCCAGATATTGCGAGTTT ATCCTGTTTAAAAAAGCCATAGACCAACGCAACAGTCCATATGGTACTTTTTAGAATGTTGCGA ACCCCTCGTGTTAGAAACTCATTCCATACAAACATTGTGTCATACAGGTCCCATCCTTCCTTTG GATCATTAAAATTCTTCTGGAAACTTCTCATGATATTATACGAGTGGCTAAAAAAGAAGTCCTT TCTAAGATCAATTGTCTGCAAGAGCTTCTTGTATCTGTCTTCATCCTTGGAATTTAGAAATTTT GCCCTCGACTCGGAATTTGACAGCTCAATCATTGCAGTCCTAGTAACTTGGTAAACTGGATGGC CAAATATAGCCCCAATTTTTCTCTGCTCGGTGATGATTAGCATGTAATAAGGTCCGAGGAACTT AATGAAACCGATGATTCCAAAACATTTTGTAACAAATTTTACTCCACCAGTTGACCTGTGGTCT TCATCAAGAACCTTTAGCAGATCAAGATATCCACTATGTGAGTACACAGTTGAACTCTCATCAA TGTTGAGCTCTGATGGTTCGATTCTATCAATCTTGAGTAGTTTCCATGATGTTTTGTCAGTGTT AGTTCCGAGAATATAGAATTT
Genomic sequence	ATATGATATCAGGCTTAAGATTCAGCTTGGATGTCTCCTGAGACCAGAATAGGGGAATGGAACC TCTGTTCTGCACAACAGAGCTTATTTGCTTTGGTCCAAGCATGTCCTCAAAAATAATTTGCTCA GTCTCAACATCATTTGCTACACTACCCTCGTCATTCACACCTCTCTTTAAATACCTGTTCAACA AAATAACAAAATCAAAACAAGAATGCCATAATCCACATGCATTTCTTAGTAACGTCAACCCAAA ACATGCAAAGCAAATTACTAGGAAAAATATATATACCTGGTGCCAGCATAATGCCTCGAGCGTC TAGCAACAAGCGTCAGCATAATGTCTTTCCCAGATATTGCGAGTTTATCCTTGATAAAAATGGT AATTAGGTTATATTATTCCAAAATTATGTCAGAAATAAAAAAAATTGCAATATCCAAGAGAAAT AAATAATTTAGACAAAAAGGAAGTTCACGTGGCAATGGATACACTGTCAGTTTTTCTTTAGAGA AAGGTTTCACATAAGAAGAAATGTCTCAGCTCTACAAGATAAGTCCATGTATAATTACAAGCAT ATCCCATTATGATGTTCTCCTATGTACATTTTTTTCCATACAGCATGATTTTACTGATAAAGAT GGAAAGACGCTAATAACCTATGAATGTTACTTGTTTACACAAGCAAATAAAAATCATGAGTGTA GCTCACTAGTAAAACAAATGAATAATTAAGCAGGAAATTGACATCTCAACATCAATAAGACCTC GAGGATAGGCTCTTGCTAATCTGCGCAATTGATAGTCTAGTATTTCTCTACGGAAAGAAGGGTC TTCATTTTGTTGCGCTCTACCATGTTTCACTAGTCCTATTTAATGAGAACAATAAAAACACTAA TTTATGGGTATGTACCTGTTTAAAAAAGCCATAGACCAACGCAACAGTCCATATGGTACTTTTT AGAATGTTGCGAACCCCTCGTGTTAGAAACTCATTCCATACAAACATTGTGTCATACAGGTCCC ATCCTTCCTTTGGATCATTAAAATTCTTCTGGAAACTTCTCATGATATTATACGAGTGGCTAAA AAAGAAGTCCTTTCTAAGATCAATTGTCTGCAAGAGCTTCTTGTATCTGCACATCAATAAAGGT TAGATTATCATGAATACACAGTGTAGTCATTCGACATGGGAAATAAATATGTAGCTTTGAAGTT TTATAGAAAAAGAACTAAATGTTCCATGGTCATAAAATTTGTAAGGTAAACAGAAGGGAAAAAG AAAAACATGTAGGCCTTGTTTGGATGGGCCTCAATCCAGCTGGCCAGCCTACGGGAATGTACTT GGAAACCAGGCTGCCAAACAAGGCTATAAGGTAATTGGAGGGCATAAAATGTGATGCAAGATAC CTGTCTTCATCCTTGGAATTTAGAAATTTTGCCCTCGACTCGGAATTTGACAGCTCAATCATTG CAGTCCTAGTAACTTGGTAAACTGGATGGCCAAATATAGCCCCAATTTTTCTCTGCTCGGTGAT GATTAGCATGTAATAAGGTCCGAGGAACTTAATGAAACCTGAACAGAGAAATCATCATGAATGC ATTGTTTTTTTATTTGTCATATGCTTTGCATTATGAAATGGTTATAGAAAGATGGATAACTTAC CGATGATTCCAAAACATTTTGTAACAAATTTTACTCCACCAGTTGACCTGTGGTCTTCATCAAG AACCTTTAGCAGATCAAGATATCCACTATGTGAGTACACAGTTGAACTCTCATCAATGTTGAGC TCTGATGGTTCGATTCTATCAATCTTGAGTAGTTTCCATGATGTTTTGTCAGTGTTAGTTCCGA GAATATAGAATTT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_006579* 						
					
						PMCS
						0.362829722

Conservation Information
Conserved circRNAs	osi_circ_006579*
PMCS	0.362829722

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0195600_circ_g.8

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