Detail information of Os11g0181100_circ_g.3


General Information
CircRNA Name Os11g0181100_circ_g.3
ID in PlantcircBase osa_circ_008701
Alias Os_ciR7223
Organism Oryza sativa
Position chr11: 4080356-4082342  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os11g0181100
Parent gene annotation Similar to Transmembrane protein TM9SF3 (Fragment). (Os11t018110
0-01)
Parent gene strand +
Alternative splicing Os11g0181100_circ_g.1 Os11g0181100_circ_g.2 Os11g0181100_circ_g.4
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0181100-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTACACCCTCTGTTATCTCATTGATGGGTGGACTACTCCCCTTCGGCAGCATCTTCATCGAG
ATGTACTTTGTGTTTACTTCATTCTGGAACTACAAGatccattggttctccatcttcaattcgt
tcatgatggttattttcttgactggattggtatcaatgatattgatgaggacgctgagaaatga
ttatgcga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCCATTGGTTCTCCATCTTCAATTCGTTCATGATGGTTATTTTCTTGACTGGATTGGTATCAA
TGATATTGATGAGGACGCTGAGAAATGATTATGCGAAATATGCTCGTGAAGATGATGATCTGGA
GTCGCTTGTAAGTACTGAACGTGAAGCCTCACGCTTACAATCACTTGTGTATTCCCTCTGGTAG
CAGGAGTCATTTTTTGTTTACTTTAATGGTCTTTGAGATGTAATCTTATTTTTGAATTTCATAA
TGGATTTTACAGTGAATCTACTCATCATTTTCATGCAAGCAATCTAATATTCAACAAAAGTAAA
CTAGTCAAACATCAAGTTTTACAGTACCCTCCCGATAATGATAACTTTTGTGTGTGTGTGTGTG
TGTGTGACTGGACGAATTATTTGAATATTCATAGCAAATCATTTTGCATTATTTTCATCTAATC
TCTTGATAGTTTTGTTAACTTATATTTTTCTTTTATCAGGAAAGAGATGTTAGTGAGGAATCTG
GTTGGAAGCTTGTCCATGGAGATGTTTTCCGGCCTCCTCGTAGCTTGGTGTTTCTTTCTGCTTT
TGTTGGTATTGGCACTCAGCTGGCGGCTCTTATTCTGCTCGTGATTGTATTGGCCATTGTTGGC
ATGTTATATGTTGGGTAAGCTCTAAATCAGCTTTCTTAGTATCCTTTTTTTCTGCATCGCATGT
GCACATGTATTAGGCATAGAATACGCACCCTTTGGATTGAAAAATGGAAATATGGGCAATACGA
GTGGAGTCTTTGGTAGGGCAATATGAAAGGCCCCAAGTGACAATACAGTTGAAGGTACTTTTGG
AGCCATTAATATGCTTGTCTGGAACATCACTAATTGCACAACCCTAATTTCTACAAGGTGACGG
ATACTCGAATAGATGGACAATGACACAATAGTATAAGCATGGTATATTTTATACCTAGAGATGC
CTTTGACCCCATTATTAATTTTGATTTCAACCTCATTGCTATATAATATGGCTTATTTGTTTAG
TCCGATTACAACCTCTGTTAAAACTCATCCACGCTGCCTTCTGGAGCAGTGGTCTCTTTATATC
AGCGGGCTCAACTCTATCTACCATAAGACATTGGTGAAATAAGTGTACTGCTTTCATTACCATA
TGGAATAATGTTATAGTCAGATAATATGACTATGAATTTCCAATGTCATTTTTCCTAACTAAAA
TATCATACTCAACTTGCCAGACGTAGCTTACCATTACATCTGTATTGTGTACTACACTGTTTTA
TCTTTCATTTCTGGATTGACAATAATCAGTAATGTTTGTTCAGCTAGCTAGTATTTCTTTGCAC
CCTACTAAATGCTGTACTTCTTATTTGTCAGACGAGGAGCTATCATCACGACCTTCATCGTGTG
CTACGCCCTTACATCTTTCATTTCTGGATATGTTAGTGGTGGCCTCTACTCAAGGAATGGCGGT
ATGTTTCTATATATATAGTTTTTGTTGTTGGACTTGCCCGTTTTATTCTACTATCCTGAAATAG
ATTATTCAGTTTTGAAATGTTTCAATTTCTGTGTTTCTTATCTACTGTTCACTGAATCCATTTC
TGATCCATGGCAGGCAAAAACTGGATAAAGTCTATGATCCTTACTGCATCCCTTTTTCCGTTCT
TGTGCTTTTCGATTGGATTGGTGTTGAACACCATTGCTATCTTCTACCGTTCACTGGCAGCCAT
ACCATTTGGCACAATGGTTGTCATATTTGTCCTGTGGGCTTTCATCTCTTTTCCTTTGGTTCTA
TTGGGAACTGTAGTTGGTAGAAATTGGAGTGGTGCTCCCAACAATCCCTGTCGTGTTAAGACAA
TTCCACGTCCTATTCCTGAGAAGAAGTGGTATCTTACACCCTCTGTTATCTCATTGATGGGTGG
ACTACTCCCCTTCGGCAGCATCTTCATCGAGATGTACTTTGTGTTTACTTCATTCTGGAACTAC
AAG
Conservation Information
Conserved circRNAs NA
PMCS 0.193751803
Functional Information
Coding potential Y
Potential coding position 4080387-4082339(+)
Potential amino acid sequence MMVIFLTGLVSMILMRTLRNDYAKYAREDDDLESLERDVSEESGWKLVHGDVFRPPRSLVFLSA
FVGIGTQLAALILLVIVLAIVGMLYVGRGAIITTFIVCYALTSFISGYVSGGLYSRNGGKNWIK
SMILTASLFPFLCFSIGLVLNTIAIFYRSLAAIPFGTMVVIFVLWAFISFPLVLLGTVVGRNWS
GAPNNPCRVKTIPRPIPEKKWYLTPSVISLMGGLLPFGSIFIEMYFVFTSFWNYKIHWFSIFNS
FMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLESLERDVSEESGWKLVHGDVFRPPRSLVFLS
AFVGIGTQLAALILLVIVLAIVGMLYVGRGAIITTFIVCYALTSFISGYVSGGLYSRNGGKNWI
KSMILTASLFPFLCFSIGLVLNTIAIFYRSLAAIPFGTMVVIFVLWAFISFPLVLLGTVVGRNW
SGAPNNPCRVKTIPRPIPEKKWYLTPSVISLMGGLLPFGSIFIEMYFVFTSFWNYKIHWFSIFN
SFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLESLERDVSEESGWKLVHGDVFRPPRSLVFL
SAFVGIGTQLAALILLVIVLAIVGMLYVGRGAIITTFIVCYALTSFISGYVSGGLYSRNGGKNW
IKSMILTASLFPFLCFSIGLVLNTIAIFYRSLAAIPFGTMVVIFVLWAFISFPLVLLGTVVGRN
WSGAPNNPCRVKTIPRPIPEKKWYLTPSVISLMGGLLPFGSIFIEMYFVFTSFWNYKIHWFSIF
NSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLESLERDVSEESGWKLVHGDVFRPPRSLVF
LSAFVGIGTQLAALILLVIVLAIVGMLYVGRGAIITTFIVCYALTSFISGYVSGGLYSRNGGKN
WIKSMILTASLFPFLCFSIGLVLNTIAIFYRSLAAIPFGTMVVIFVLWAFISFPLVLLGTVVGR
NWSGAPNNPCRVKTIPRPIPEKKWYLTPSVISLMGGLLPFGSIFIEMYFVFTSFWNYK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015