Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0181100_circ_g.1 |
ID in PlantcircBase | osa_circ_008699 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 4079211-4080178 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os11g0181100 |
Parent gene annotation |
Similar to Transmembrane protein TM9SF3 (Fragment). (Os11t018110 0-01) |
Parent gene strand | + |
Alternative splicing | Os11g0181100_circ_g.2 Os11g0181100_circ_g.3 Os11g0181100_circ_g.4 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os11t0181100-01:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.300172701 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4080090-4080175(+) |
Potential amino acid sequence |
MTYSVKWVQTNVAFARRFEVYLDYPFFEHQYKAEETVKLWVNKVGPYNNPQETYNYYSLPFCQP SENPAHKWGGLGEVLGGNELIDSQVDIKFLKNVEKGPICTIELDDNKIQQFTDAIERSYWFELF IDDLPLWGFVGETDKNNENKHYLYTHKNIVVKYNGNRIIHVNLTQESPKLLEAGKKLDMTYSVK WVQTNVAFARRFEVYLDYPFFEHQYKAEETVKLWVNKVGPYNNPQETYNYYSLPFCQPSENPAH KWGGLGEVLGGNELIDSQVDIKFLKNVEKGPICTIELDDNKIQQFTDAIERSYWFELFIDDLPL WGFVGETDKNNENKHYLYTHKNIVVKYNGNRIIHVNLTQESPKLLEAGKKLDMTYSVKWVQTNV AFARRFEVYLDYPFFEHQYKAEETVKLWVNKVGPYNNPQETYNYYSLPFCQPSENPAHKWGGLG EVLGGNELIDSQVDIKFLKNVEKGPICTIELDDNKIQQFTDAIERSYWFELFIDDLPLWGFVGE TDKNNENKHYLYTHKNIVVKYNGNRIIHVNLTQESPKLLEAGKKLDMTYSVKWVQTNVAFARRF EVYLDYPFFEHQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |