Detail information of Os11g0181100_circ_g.1


General Information
CircRNA Name Os11g0181100_circ_g.1
ID in PlantcircBase osa_circ_008699
Alias NA
Organism Oryza sativa
Position chr11: 4079211-4080178  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0181100
Parent gene annotation Similar to Transmembrane protein TM9SF3 (Fragment). (Os11t018110
0-01)
Parent gene strand +
Alternative splicing Os11g0181100_circ_g.2 Os11g0181100_circ_g.3 Os11g0181100_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0181100-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAATTGGACATGACCTATTCAGTGAAGTGGGTGCAAACAAACGTTGCATTTGCACGACGTTTT
GAAGTTTACTTGGACTACCCGTTCTTTGAACATCAGtacaaagctgaagaaacggttaaactct
gggtaaacaaggttggcccgtacaataacccgcaagaaacttacaactattacagcctcccatt
ttgtcagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TACAAAGCTGAAGAAACGGTTAAACTCTGGGTAAACAAGGTTGGCCCGTACAATAACCCGCAAG
AAACTTACAACTATTACAGCCTCCCATTTTGTCAGCCATCTGAAAACCCCGCACACAAATGGGG
TGGTCTCGGAGAGGTCCTTGGCGGCAATGAGCTGATCGATAGTCAGGTTGATATAAAGTTTTTA
AGTAAGTTGATCTTTTCATACCCTCCTTGATTTTATTTACTTTTGGAATGTGCATCAATGTATG
TTCCTTGCAACTAACCGATTTCCCTGACCATTTTACATTAAACTTCTTTGTTTTAGAAAATGTG
GAGAAGGGTCCCATTTGCACAATTGAACTTGATGACAACAAGATTCAACAATTTACTGATGCCA
TTGAAAGGTCATATTGGTTTGAACTCTTCATAGGTATGAATCTGCATTTAATTGGGCATTGTTT
TCTTATTTTGTATGCTATTTCTCATTTCTGAGTACTGACATTCTTTTTATCCAACTTTCTCTGC
ATTGCTTTCTATTGTCCAACCGCCTAGATGATCTTCCATTATGGGGTAACAAATTCTAAACCTA
AATGACATTTCTTTTGCTTTAACACTTTCTACCCTCTACCTCTCTTGAATAACATGCAAGTTGC
CTCTGAGCAGGTTTTGTTGGTGAGACTGACAAAAACAACGAAAATAAGCACTACCTCTACACAC
ACAAGAACATTGTTGTTAAATACAATGGTAACAGGGTATGTGCTGGTCTGCTTTAAGACCTTAA
AATATTAGCTGAAACCTATTATACTGGCTAATTATTTTTTTTTGCAGATAATTCATGTCAATCT
TACTCAAGAGTCACCTAAGCTTCTTGAAGCTGGCAAAAAATTGGACATGACCTATTCAGTGAAG
TGGGTGCAAACAAACGTTGCATTTGCACGACGTTTTGAAGTTTACTTGGACTACCCGTTCTTTG
AACATCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.300172701
Functional Information
Coding potential Y
Potential coding position 4080090-4080175(+)
Potential amino acid sequence MTYSVKWVQTNVAFARRFEVYLDYPFFEHQYKAEETVKLWVNKVGPYNNPQETYNYYSLPFCQP
SENPAHKWGGLGEVLGGNELIDSQVDIKFLKNVEKGPICTIELDDNKIQQFTDAIERSYWFELF
IDDLPLWGFVGETDKNNENKHYLYTHKNIVVKYNGNRIIHVNLTQESPKLLEAGKKLDMTYSVK
WVQTNVAFARRFEVYLDYPFFEHQYKAEETVKLWVNKVGPYNNPQETYNYYSLPFCQPSENPAH
KWGGLGEVLGGNELIDSQVDIKFLKNVEKGPICTIELDDNKIQQFTDAIERSYWFELFIDDLPL
WGFVGETDKNNENKHYLYTHKNIVVKYNGNRIIHVNLTQESPKLLEAGKKLDMTYSVKWVQTNV
AFARRFEVYLDYPFFEHQYKAEETVKLWVNKVGPYNNPQETYNYYSLPFCQPSENPAHKWGGLG
EVLGGNELIDSQVDIKFLKNVEKGPICTIELDDNKIQQFTDAIERSYWFELFIDDLPLWGFVGE
TDKNNENKHYLYTHKNIVVKYNGNRIIHVNLTQESPKLLEAGKKLDMTYSVKWVQTNVAFARRF
EVYLDYPFFEHQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017