Detail information of Os11g0181100_circ_g.4


General Information
CircRNA Name Os11g0181100_circ_g.4
ID in PlantcircBase osa_circ_008702
Alias Os_ciR7224
Organism Oryza sativa
Position chr11: 4080889-4082020  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os11g0181100
Parent gene annotation Similar to Transmembrane protein TM9SF3 (Fragment). (Os11t018110
0-01)
Parent gene strand +
Alternative splicing Os11g0181100_circ_g.1 Os11g0181100_circ_g.2 Os11g0181100_circ_g.3
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os11t0181100-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGTTTCTTATCTACTGTTCACTGAATCCATTTCTGATCCATGGCAGGCAAAAACTGGATAAA
GTCTATGATCCTTACTGCATCCCTTTTTCCGTTCTTatgttttccggcctcctcgtagcttggt
gtttctttctgcttttgttggtattggcactcagctggcggctcttattctgctcgtgattgta
ttggccat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGTTTTCCGGCCTCCTCGTAGCTTGGTGTTTCTTTCTGCTTTTGTTGGTATTGGCACTCAGCT
GGCGGCTCTTATTCTGCTCGTGATTGTATTGGCCATTGTTGGCATGTTATATGTTGGGTAAGCT
CTAAATCAGCTTTCTTAGTATCCTTTTTTTCTGCATCGCATGTGCACATGTATTAGGCATAGAA
TACGCACCCTTTGGATTGAAAAATGGAAATATGGGCAATACGAGTGGAGTCTTTGGTAGGGCAA
TATGAAAGGCCCCAAGTGACAATACAGTTGAAGGTACTTTTGGAGCCATTAATATGCTTGTCTG
GAACATCACTAATTGCACAACCCTAATTTCTACAAGGTGACGGATACTCGAATAGATGGACAAT
GACACAATAGTATAAGCATGGTATATTTTATACCTAGAGATGCCTTTGACCCCATTATTAATTT
TGATTTCAACCTCATTGCTATATAATATGGCTTATTTGTTTAGTCCGATTACAACCTCTGTTAA
AACTCATCCACGCTGCCTTCTGGAGCAGTGGTCTCTTTATATCAGCGGGCTCAACTCTATCTAC
CATAAGACATTGGTGAAATAAGTGTACTGCTTTCATTACCATATGGAATAATGTTATAGTCAGA
TAATATGACTATGAATTTCCAATGTCATTTTTCCTAACTAAAATATCATACTCAACTTGCCAGA
CGTAGCTTACCATTACATCTGTATTGTGTACTACACTGTTTTATCTTTCATTTCTGGATTGACA
ATAATCAGTAATGTTTGTTCAGCTAGCTAGTATTTCTTTGCACCCTACTAAATGCTGTACTTCT
TATTTGTCAGACGAGGAGCTATCATCACGACCTTCATCGTGTGCTACGCCCTTACATCTTTCAT
TTCTGGATATGTTAGTGGTGGCCTCTACTCAAGGAATGGCGGTATGTTTCTATATATATAGTTT
TTGTTGTTGGACTTGCCCGTTTTATTCTACTATCCTGAAATAGATTATTCAGTTTTGAAATGTT
TCAATTTCTGTGTTTCTTATCTACTGTTCACTGAATCCATTTCTGATCCATGGCAGGCAAAAAC
TGGATAAAGTCTATGATCCTTACTGCATCCCTTTTTCCGTTCTT
Conservation Information
Conserved circRNAs NA
PMCS 0.129275802
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015