Detail information of Os11g0572100_circ_g.5


General Information
CircRNA Name Os11g0572100_circ_g.5
ID in PlantcircBase osa_circ_009648
Alias NA
Organism Oryza sativa
Position chr11: 21446857-21447116  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os11g0572100
Parent gene annotation Similar to DNA ligase (EC 6.5.1.2). (Os11t0572100-01);Similar to
DNA ligase (EC 6.5.1.2). (Os11t0572100-02);Similar to Replicati
on factor C 110 kDa subunit. (Os11t0572100-03);Similar to Replic
ation factor C 110 kDa subunit. (Os11t0572100-04)
Parent gene strand +
Alternative splicing Os11g0572100_circ_g.3 Os11g0572100_circ_g.4 Os11g0572100_circ_g.6 Os11g0572100_circ_g.7 Os11g0572100_circ_g.8
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACGTACGGCAGATTTCACAGCCAACATAGCTTTTCACGCACAAATGTATTCCTGATTGCATAGA
AACCTTCTTTATAGGCAGGAATTCTTGCTGTTCTAAgttatctgttgacctctggacatattct
caatttcttgcaatttttaggcagttacgatacagttgcatgcagcaacttatttaggggtaat
ataagtcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTATCTGTTGACCTCTGGACATATTCTCAATTTCTTGCAATTTTTAGGCAGTTACGATACAGT
TGCATGCAGCAACTTATTTAGGGGTAATATAAGTCCTATTTGTTTGTCAATCTGAAGTTAAACA
ATGGCTATCCCCAAGATCACTCAAATACTCGTACGTACGGCAGATTTCACAGCCAACATAGCTT
TTCACGCACAAATGTATTCCTGATTGCATAGAAACCTTCTTTATAGGCAGGAATTCTTGCTGTT
CTAA
Conservation Information
Conserved circRNAs NA
PMCS 0.123717949
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017