Detail information of Os06g0194900_circ_g.15


General Information
CircRNA Name Os06g0194900_circ_g.15
ID in PlantcircBase osa_circ_030047
Alias Os_ciR4333
Organism Oryza sativa
Position chr6: 4798358-4798721  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os06g0195025
Parent gene annotation Hypothetical protein. (Os06t0195025-00)
Parent gene strand +
Alternative splicing Os06g0194900_circ_g.12 Os06g0194900_circ_g.13 Os06g0194900_circ_g.14 Os06g0194900_circ_g.16 Os06g0194900_circ_g.17 Os06g0194900_circ_g.18 Os06g0194900_circ_g.19 Os06g0194900_circ_g.20 Os06g0194900_circ_g.21 Os06g0194900_circ_g.22 Os06g0194900_circ_g.23 Os06g0194900_circ_g.24 Os06g0194900_circ_g.25 Os06g0194900_circ_g.26 Os06g0194900_circ_g.27 Os06g0194900_circ_g.28
Support reads 6
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0194900-02:2
Os06t0194900-04:2
Os06t0194900-03:2
Os06t0194900-01:2
Os06t0194900-02:2
Os06t0194900-04:2
Os06t0195025-00:2
Os06t0194900-03:2
Os06t0194900-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAGAAAATTTTACCTTCCAGCAATTTCTTGGAATGTACTGGTGATGATGAAATCAGTGTGATT
CATGGCGATAAGATCAGCAGTGAATTGGCATGAGAActcctcaatttcagggtggaaagcagtg
agcctcttgtcagcctcggtgtacgggaagtagacactcatgtcagctccaggagagacaatgt
tgaacttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCTCAATTTCAGGGTGGAAAGCAGTGAGCCTCTTGTCAGCCTCGGTGTACGGGAAGTAGACA
CTCATGTCAGCTCCAGGAGAGACAATGTTGAACTTGGGATCAAAAACATCTATGCCATGCACAA
CTCGGTAAAGCCCAGGAAGGGTGAATGCAATGTGTGATTCATACTGCCCCACAGTGTCCTTGCT
GAAGAAACAGAGGAAACAAACATCAGATACCCGTTTAGGTGTTGGCACAACGCAGCAATATTCT
ACTGCTCTTTAGAAAATTTTACCTTCCAGCAATTTCTTGGAATGTACTGGTGATGATGAAATCA
GTGTGATTCATGGCGATAAGATCAGCAGTGAATTGGCATGAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.50282239
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015