Detail information of Os02g0452500_circ_g.21


General Information
CircRNA Name Os02g0452500_circ_g.21
ID in PlantcircBase osa_circ_014590
Alias NA
Organism Oryza sativa
Position chr2: 14952128-14954537  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os02g0452500
Parent gene annotation Similar to SNARE-interacting protein KEULE. (Os02t0452500-01)
Parent gene strand -
Alternative splicing Os02g0452500_circ_g.1 Os02g0452500_circ_g.2 Os02g0452500_circ_g.3 Os02g0452500_circ_g.4 Os02g0452500_circ_g.5 Os02g0452500_circ_g.6 Os02g0452500_circ_g.7 Os02g0452500_circ_g.8 Os02g0452500_circ_g.9 Os02g0452500_circ_g.10 Os02g0452500_circ_g.11 Os02g0452500_circ_g.12 Os02g0452500_circ_g.13 Os02g0452500_circ_g.14 Os02g0452500_circ_g.15 Os02g0452500_circ_g.16 Os02g0452500_circ_g.17 Os02g0452500_circ_g.18 Os02g0452500_circ_g.19 Os02g0452500_circ_g.20 Os02g0452500_circ_g.22 Os02g0452500_circ_g.23 Os02g0452500_circ_g.24 Os02g0452500_circ_g.25 Os02g0452500_circ_g.26
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0452500-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGTAGCCATTGTGTTCAAACAAGCATTGTACTTGTGTGAATCCAAAGCATTTTCACTAAAAAG
CTCCTCCAATGCTCTTTCATGGTCAGTGGTGAAACCctcatggacatacttgttgccatccata
catagaagatcatggcacatcgcgtcatatgtccattcatgaatgattggtgcaatctatggtg
ccaaagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCATGGACATACTTGTTGCCATCCATACATAGAAGATCATGGCACATCGCGTCATATGTCCAT
TCATGAATGATTGGTGCAATCTATGGTGCCAAAGAAATTATGAAGCAGCAGCATATATAGACCA
TGCTCAATGTAGCACTAGGATAGATGTCAAAACTGCGTATACAGGTATGTTTACAATGTACCTG
GTCTACTGAACGATCAACTATAAGTAGCTCACATGTCTCAGTTTGAGGATAATCCGGTATTGAT
GTTTTCAATTTTGAAAGGCAATTCCAAACAGCAGCAGCAAGTTTTGTAGGCACTAAATCTCGTA
GTGTTGTCGTTACAGAAGCATCAATTGTCTTGGCGACACGGTAGTGCACTCTAGGGAATTCCTG
TAATTTGTTGAACAATACATAAAAAAAGTGAATTGTTACCTAATAGTTACTCTAGAACGACATG
TGCACATCAAGCACCAAAAGTTATTCATTGTATGTCCATGGAAAGTAAATGTATTATGTATACA
GAAATAACCCAATATGTGGAGCAGAACATCAGTTGAGCATCAAAATCTTTTGGTATTGCCCACC
TTCTTTTCCAGTACTCACTAGGGATACAAACAGGTCAGGTCAAGGGCCAACCAAATTGAGGCAT
TGACCTTTGCTAGTTCTTTTTCTTCAGAAACAGCTCAAGGGCATCTATGGGGGCACATTTAGGA
CTATCGTACTGCATACTAAGGTAAAAAAAACCCAATTAAGTGGTAAGTGAGCCATCAATAAGTA
TGGGCTAATGGGCCAGACCACTGGCATCCCTAATTTTTTCACTTGCAACTGCATCATTTATCAT
CTGAAAAAAATGCTGTCTGATTATACCAGGAGTTCACTTCCTACAGAGATAGTTCCTTTTTGTC
ATACAAATCACCTACTTTAGTGTTGATGAATGTAGGCCAGGTCAGGTCAAGATGATGACCTACC
GGAACTGCATAGCATAGTGCCAACTGTCAACTGTCAACCACAGTGCATCTCCGACATTGGATCT
GCAGGCAATTTATATAACAATCTAGGAGGGATGTGTTGAGCTCTGCCTCTGCATTCTTATTGCA
GTCTTTGCTCCTCACGCTCTCCTCTTCTTCATTGTCCCACATAATAATTAAATATTCCCTCCAT
CCCAAAATATAGGAAAGTAGCTATATTTTGGGACAGAGGGAGTACATAGAACCACCTTTTTTTT
TGGGGGGGGGGGGGGGAGGGGGGGGTTTACTTCTTGTGACATGGATACTACTGGTTTATTGTTT
TGACAAGAATTATGTGTGCTTGTGTAATAAAATAGTAAGTACCCACAAACCAAATGCTTATTGT
TTTAGGCCACTAAATAGGCTGAGATTACACCATGACTATGAACAAAAGGAAGTTAGCAGAAATT
ACATAACAGAGGTTTCAGGTGCTGGCTGAAGAGTCCAGGATGTGGGTATAGCGGACAGCATATG
AGAAGTGGGATCAAACCAACAGGGGGAAACACAGGAGGAATTCAAGAGATCTTCGCTCCCTGTG
ATATGGGCCTTACAGATAGAGGGTCTAGAGGCCGTATTATGTATTATAGTTAAGAAGGTTATTA
GTTAGCTAGGAAGTTGGACATAGTTTGTTAGGAAGGGTCAGGGTATTTCCAATGCAATAATAAA
ACTAACAATCTTGTTTCTGTAAGCTGCCACATCATTGTTTTTGCTTAGGAGAGGGAGAGGAGAT
AGAAACAAGAAACAATTAGATAGAAATGAACATTACTGAGAAGTCGTATCTATCGTCAATTAGG
AATTCCATGCAGCAATTAATGCTTGTGGGGCCTTGTGAACATACCATGCATTCTAAGGGCTATT
ACTACTGTTGTTTACATATGTCATTTCTGTATTTGGAATGTCCTTAAGTTAATCCTATCGATAA
AAGGACACCACATACCCCATTATGAAACAAGCAATCAATCTATATGGTTAGTCCAGTAAGCCTA
AGAGTCACTATCACAACAAGTGAAGCCCTGCCAGCACTAGTAGAGGGAAAGGCCTTATCCCATC
AGTCTTTGGACCAGTTTCACATTTCGTGGGACAAACCAAAGGGCAATCCTGCCCCACATATATC
CCTAACTTCATGCGATCATCATAAAGCACTTTGTTTAGAACTTTAGATCTAAAGCACCCTATTT
TTCAGACCTAAAACACTTTGGTTTGCATTAAATCAGGATATATTAACAGGAAACACAAAAAAAA
TGTGCAACAGCATCTTTCACAAATAAGAAATGTATTCATACCCTCATTGATGCAAACACTGTAG
ATATGCGAGTAGCCATTGTGTTCAAACAAGCATTGTACTTGTGTGAATCCAAAGCATTTTCACT
AAAAAGCTCCTCCAATGCTCTTTCATGGTCAGTGGTGAAACC
Conservation Information
Conserved circRNAs NA
PMCS 0.109996508
Functional Information
Coding potential Y
Potential coding position 14954435-14952194(+)
14954449-14952130(-)
14952197-14954455(-)
Potential amino acid sequence MRVAIVFKQALYLCESKAFSLKSSSNALSWSVVKPSWTYLLPSIHRRSWHIASYVHS*(+)
MATRISTVFASMREFPRVHYRVAKTIDASVTTTLRDLVPTKLAAAVWNCLSKLKTSIPDYPQTE
TCELLIVDRSVDQIAPIIHEWTYDAMCHDLLCMDGNKYVHEGFTTDHERALEELFSENALDSHK
YNACLNTMATRISTVFASMREFPRVHYRVAKTIDASVTTTLRDLVPTKLAAAVWNCLSKLKTSI
PDYPQTETCELLIVDRSVDQIAPIIHEWTYDAMCHDLLCMDGNKYVHEGFTTDHERALEELFSE
NALDSHKYNACLNTMATRISTVFASMREFPRVHYRVAKTIDASVTTTLRDLVPTKLAAAVWNCL
SKLKTSIPDYPQTETCELLIVDRSVDQIAPIIHEWTYDAMCHDLLCMDGNKYVHEGFTTDHERA
LEELFSENALDSHKYNACLNTMATRISTVFASMREFPRVHYRVAKTIDASVTTTLRDLVPTKLA
AAVWNCLSKLKTSIPDYPQTETCELLIVDRSVDQIAPIIHEWTYDAMCHDLLCMDGNKYVHE(-
)
MNGHMTRCAMIFYVWMATSMSMRVSPLTMKEHWRSFLVKMLWIHTSTMLV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017