Detail information of Os11g0461000_circ_g.2


General Information
CircRNA Name Os11g0461000_circ_g.2
ID in PlantcircBase osa_circ_009312
Alias NA
Organism Oryza sativa
Position chr11: 15713070-15722355  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0461000
Parent gene annotation Peptidase S10, serine carboxypeptidase family protein. (Os11t046
1000-01);Hypothetical conserved gene. (Os11t0461000-02);Peptidas
e S10, serine carboxypeptidase family protein. (Os11t0461000-03)
Parent gene strand +
Alternative splicing Os11g0461000_circ_igg.1 Os11g0461000_circ_igg.2 Os11g0461000_circ_igg.3 Os11g0461000_circ_g.1 Os11g0461000_circ_g.3 Os11g0461000_circ_g.4 Os11g0461000_circ_g.5 Os11g0461000_circ_g.6 Os11g0461000_circ_g.7 Os11g0461000_circ_g.8
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0461000-03:3
Os11t0461000-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTACGTTGCTGGCAATCCAAGGACCGAACGCCAATTTGATGAAGGTGGTAAAATTCCATTTCTC
CATGGCATGGGACTTATATCCAATGAACTTTATGAGatacgtggaggtgaacgagagtacgggc
gtgcgtctcttctactactttgtccagtcagagaaggatcctgatgtagacccacttttattgt
ggctatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osi_circ_008998
PMCS 0.196935728
Functional Information
Coding potential Y
Potential coding position 15722088-15713138(+)
15722295-15713138(+)
Potential amino acid sequence MGYVAGNPRTERQFDEGGKIPFLHGMGLISNELYEIRGGEREYGRASLLLLCPVREGS*(+)
MKVVKFHFSMAWDLYPMNFMRYVEVNESTGVRLFYYFVQSEKDPDVDPLLLWLSGGPGCSSLSG
LTHEIGPFQFAAKRYYSGGLPKIIYQPETWTKVSNIIFVDSPVGAGFSYAATQEGSKTSDTKTV
KQLVIFLRKWLHDHPQFLLNPLYIGGDSYSGYIVPTLALAIDESNDSGDKPILNLMGYVAGNPR
TERQFDEGGKIPFLHGMGLISNELYEIRGGEREYGRASLLLLCPVREGS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017