Detail information of BGIOSGA016430_circ_g.4


General Information
CircRNA Name BGIOSGA016430_circ_g.4
ID in PlantcircBase osi_circ_005462
Alias 4:19224722|19225326
Organism Oryza sativa ssp. indica
Position chr4: 19224722-19225326  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016430
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016430_circ_g.1 BGIOSGA016430_circ_g.2 BGIOSGA016430_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA016430-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAGTTACCCTCTCTAGAGGAGATCAGAGGGCGCTGCATGCAACAGCTTGAAAAACTTCGACCA
GATCACATCAGGCGGTTAAATCCAACACCTTACAAGgtatccattccatgcaaaaagcgatgtt
tcagattgtatggaaaagaaggctaccccttagtagatatcatgatgcgtgaaagtgaaccatc
accgaagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATCCATTCCATGCAAAAAGCGATGTTTCAGATTGTATGGAAAAGAAGGCTACCCCTTAGTAG
ATATCATGATGCGTGAAAGTGAACCATCACCGAAGGTAACTATGAATATTGTCCAAATTATCCC
TATTTGTTACCATGCAATGCTGCTATCACTTATATCCTTTGCTGACCCTTTTTTATCTACAGTA
ATTATTCTCGATTATTAAACTGATCTTGTTTACACCTAACATTTCAGGCTGGAGAACGAATCCT
TTGTCGTCATCCATTCCTTGAATCCAAGAGAGCATATGTTGTCCCCCAGCATGTTGAGGAGCTC
CTACAATGCTACTGGCCTGGTACATCAAGTATGTATCGTGGATCTTTCTAAAAAATGATAAGTT
CTTCAGTTGACATGGCTAATTTTGAATTGTAAAGGAACTAATCAGAGTTGGTATTCTATCCTAC
TGCTTATTGTGCAACAATTACATATGCATATGTGTCCCTTTCAGATAAACCTAGGGTAGAGTTA
CCCTCTCTAGAGGAGATCAGAGGGCGCTGCATGCAACAGCTTGAAAAACTTCGACCAGATCACA
TCAGGCGGTTAAATCCAACACCTTACAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 19224792-19225323(+)
Potential amino acid sequence MMRESEPSPKAGERILCRHPFLESKRAYVVPQHVEELLQCYWPGTSNKPRVELPSLEEIRGRCM
QQLEKLRPDHIRRLNPTPYKVSIPCKKRCFRLYGKEGYPLVDIMMRESEPSPKAGERILCRHPF
LESKRAYVVPQHVEELLQCYWPGTSNKPRVELPSLEEIRGRCMQQLEKLRPDHIRRLNPTPYKV
SIPCKKRCFRLYGKEGYPLVDIMMRESEPSPKAGERILCRHPFLESKRAYVVPQHVEELLQCYW
PGTSNKPRVELPSLEEIRGRCMQQLEKLRPDHIRRLNPTPYKVSIPCKKRCFRLYGKEGYPLVD
IMMRESEPSPKAGERILCRHPFLESKRAYVVPQHVEELLQCYWPGTSNKPRVELPSLEEIRGRC
MQQLEKLRPDHIRRLNPTPYK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021