Detail information of BGIOSGA016430_circ_g.3


General Information
CircRNA Name BGIOSGA016430_circ_g.3
ID in PlantcircBase osi_circ_014363
Alias Chr04:21710535_21711140(ZS97RS2), Chr04:21732704_21733309(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 19224721-19225326  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2
Parent gene BGIOSGA016430
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016430_circ_g.1 BGIOSGA016430_circ_g.2 BGIOSGA016430_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016430-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAGTTACCCTCTCTAGAGGAGATCAGAGGGCGCTGCATGCAACAGCTTGAAAAACTTCGACCA
GATCACATCAGGCGGTTAAATCCAACACCTTACAAGggtatccattccatgcaaaaagcgatgt
ttcagattgtatggaaaagaaggctaccccttagtagatatcatgatgcgtgaaagtgaaccat
caccgaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTATCCATTCCATGCAAAAAGCGATGTTTCAGATTGTATGGAAAAGAAGGCTACCCCTTAGTA
GATATCATGATGCGTGAAAGTGAACCATCACCGAAGGTAACTATGAATATTGTCCAAATTATCC
CTATTTGTTACCATGCAATGCTGCTATCACTTATATCCTTTGCTGACCCTTTTTTATCTACAGT
AATTATTCTCGATTATTAAACTGATCTTGTTTACACCTAACATTTCAGGCTGGAGAACGAATCC
TTTGTCGTCATCCATTCCTTGAATCCAAGAGAGCATATGTTGTCCCCCAGCATGTTGAGGAGCT
CCTACAATGCTACTGGCCTGGTACATCAAGTATGTATCGTGGATCTTTCTAAAAAATGATAAGT
TCTTCAGTTGACATGGCTAATTTTGAATTGTAAAGGAACTAATCAGAGTTGGTATTCTATCCTA
CTGCTTATTGTGCAACAATTACATATGCATATGTGTCCCTTTCAGATAAACCTAGGGTAGAGTT
ACCCTCTCTAGAGGAGATCAGAGGGCGCTGCATGCAACAGCTTGAAAAACTTCGACCAGATCAC
ATCAGGCGGTTAAATCCAACACCTTACAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021