Detail information of BGIOSGA016430_circ_g.1


General Information
CircRNA Name BGIOSGA016430_circ_g.1
ID in PlantcircBase osi_circ_005460
Alias 4:19220415|19225326
Organism Oryza sativa ssp. indica
Position chr4: 19220415-19225326  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA016430
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016430_circ_g.2 BGIOSGA016430_circ_g.3 BGIOSGA016430_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA016430-TA:13
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAGTTACCCTCTCTAGAGGAGATCAGAGGGCGCTGCATGCAACAGCTTGAAAAACTTCGACCA
GATCACATCAGGCGGTTAAATCCAACACCTTACAAGgattaagaaggatatgaaaccaagagaa
agtgaagacaaatgaccatgtgttaacacttaaatatcttgggaatgagtgagagagagagaat
agctggtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTAAGAAGGATATGAAACCAAGAGAAAGTGAAGACAAATGACCATGTGTTAACACTTAAATA
TCTTGGGAATGAGTGAGAGAGAGAGAATAGCTGGTGAGGCTGAGGACATTACTTATAAATGTAG
GTCAGAGAAGATGTGCTAAATAGAGGTGTTAAACATCAATAAATTTGCATGCGTTCCTTATATT
TTGTAAGGATCTTAAGAAACTATGGGCCTTGTGTTTTGAAAAGCAGGGAATGTAACTAGCATTT
CATACATTGGTCGACCTCATGCTGACCTGGTTCCATTTCTTTTTATAGGTTTGATCTGTACTTC
AGGAAAAATCCATTTGGTGGAGAATTCACTGTTTTTGCTGGTCTTGAAGAATGCATTAAGTTCA
TTGCAAATTTTAAGTTCACAGAAGATGACATTTTGTTCCTGCAATCAGTCATGCCAATGTGTGA
GGTAAGCTGTTACATAAAATTATCTTTCTGTCTTAAAGTGGCATATGGTTCTGATATAAGCTGC
TATACTATCTAAAATCCTATTAATTTGCCATATTTATAGAAAGGCTTGTTAGCATAGTCTACAA
AAACATTGCCATTTCAAATGTCAGATCTTTAATGTATCACTTGTTAGTTGTTTGCCATGATAAA
TGTTCATTTACTGATGTGATATGCGATTCTAGGATGCGTTCTTTGATTATCTCAGGAAAACCGA
CTGCTCTGATGTGGAAGTGTACTCCATTCCTGAGGGTTCAGTGGTTTTTCCAAAAGTTCCTTTG
ATGCGAGTTGAGGGTCCAGTTGCTGTAAGTACAGAGTCCCTTAACAATTGTTGTACCTAAAACA
TGTTGATCATGAACTTCTGGTTTGAACATTAACCAGAACTTTGCATGGTTCATCAGGTGGTCCA
ACTACTTGAGACACCGTTTGTAAATCTTATCAATTATGCCTCTTTGGTAACAACAAATGCTGCG
AGACACCGCCATGTTGCTGGAAAATCAAAAGTTTTACTGGAATTTGGTTTGAGACGAGCACAGG
TGTGATCTTGAACCATCCCATTTACACTGCCATTTTGATTTTTGTATGGTACACAAGTATTTGG
TATTTCTGTGCATGAAACATAGCTGTGGATTTGTATTGACAGGGGCCTGACGGTGCAATAAGTG
CTTCAAAGTATTGTTTCATGGGAGGTTTTGATGCAACCAGGTGGTAGTTCTTCCATGGTTCCAT
TTACAAATTTCATTTATAAATTCTGCATATCCATGTTACCTCTTTGCAACTATACTTTCACAAG
AAGTATATTTTGAATCATGCTTGCCTTGCTTAGTCCTTTTTCCCTCCTTAACAAAATTTTTGTT
TTTCGTCCTCAGAATGTGAAAAACTACTGTTGTAAACCATTTATTTAATTCATCGTCCTCTCAT
TATTTTGCAGTAATGTTTTGGCTGGAAATCTGTTTGGCATACCACTTCGCGGAACACATTCTCA
TGCTTATGTTAGCTCATATATGGTCAGTAAATACCTTTTTGTGTCACCGCAAAAGAAAAATTCT
TTTTGTCAACAAACATAATCCAGTATTTTCTCCTCTATCATTGGAGCACTTTATGTCTCTATTG
AAGTTTGTATGCTGTGGTTGCATTGACTAAACACAACTTTTAGTTCTTCTCCACATCAGTAGAT
GAGCCCAAATGTTGTGTCAGTTTCAAGTTGAAAGATGTGGTTTTTCTTCACTCAAATTATCTAG
TTGACAGTTGAGACTGCCTAGTGTTACAAAATGTTGCAGAACACAGTTTTGTTGTTGTGGCAAT
TGAATCCAGATTATAATCGATGAAAAAAAAAGGCACCAGAGTCTATGTTTTGTTGAATAACCTG
CACTTGCTTTGTTTTTTATCCTTTGTTAGCCATGCTAGTTATTTTTATGCTCACTCCTAGCTTG
CTGATCTACTGAGTTTTTCCTGTCTTTGCTTGATACTTATCTGAGGTACATAGATAATCATTTT
ATCAACATAGCAACTATTTTTCTTTCTGCCATTAACGTGTGATGTGCATGACAGTTTGTATTAT
CCCTTGTATTTGCAATAATAGAGAGTTATATTAGATATCATACATTCTGGAGACTTTTTCTATT
TTTATACCACTTGTTGCTAGTTGTTGCCTGAGCTAACAATCTTTTCAACCCTTTCAGAGCCTTG
ATGAGATCCCAGACAAGTCCCTCAAGAGCAAAGATGGTTCAAGAGTCTGCAAAGATTTTGTTAG
TTTGGTAAAAGAGTGGCTTCAAAAGATTCAGGTATAGCTGTAAAACCTCGTGGCATTGCTTTTA
CTTGCTACAGTACCCTTATGTTACTATTTTGTTGGTTTCAGTTAGCAGATTCGTTATGTGGTGT
ATTTGGTGAGACAAATCAAAGTGAGCTGGCAGCATTTGCATCCTATGCATTGGCTTTTCCGACC
AATTTTCTAGCTCTTGTGGACACATATGATGTAAGTTGTTGCGATGTTCTTTAATCATTTTATT
GTTGAGATGCATATATGAGTGAGTAGTTCTGAACCTTTTTTCTTTTTGAAACAGAAAGTAGGTA
TGGAACTTCACATATCATACTTTGTCAATAAACAACTTGACAAAAATCTCATATTTGTCCTTTG
GAGTCTTCCTTTTTTATGCTAGCATTTCTCAGTGGCTTCTTTTACAAAAAATCATTTTTCTTTG
AACGTTTTGCAACCTGGATTTTACAAACAGAGATGCAACCAGTTTTAAGTGTGCAAGTATTTAG
ACTTGATGATGATGTTCAACTATGGTGATTTCGATGTCATAATTAATCTGGCACTCCTCCAGGA
TGCATAAACTCTGAACAATCAGTGTGTACATCTGTAGCCTTTGTTTCATATCATTTGATAGTCT
GCTGTGCGTAGTGACATGCCCTTACCGGTACCCTGTAAGGCTGTGTTCGTTTGGACGTTTTCCC
AGCGCGCTACAGTGTTTTGCCCCGCGCACGCTTTTCAAACTACTACACGGTGTACTTTTTTGCA
AAAAGTTTCTATACAAAAGTTGTTTAAAAAAATCAAATTAATCCATTTTTGAAAAAAAAATTAG
CTAATACTTAATTAATCACGTGTTAATGAACCGTTCCGTTTTCCGTGTTACTGTAGCGCGCTGG
GAAAACGTCCAAACGAACACAGCCTTAGTCTGTAACTCTTTAGTGGTGTGCAGATTTTCAATGC
ATTTATGCCGCACATGTACGTTCTATGTTCTCTAGCTTTAACTCACCAAGTTTTCCCTTTCAGG
TTATGCGAAGTGGAATTCCAAACTTCTGTGCAGTAGCGCTAGCACTCCATGACTTAGGGTAGGT
CAAATCAAACGTATCCTTGGCTACTGTACATTTGCATTTTGATTGAAGCTCGATTGAATTGGAG
CTTATCTTCTCATGGAGATCTTACATGACAGTGTCTTACAGAAAATATAAATGAAGTTAAAGAT
TAAGGCAAAGTTCACCCAATACAATCCAATTTAAGATGGTACAAGTTTATATCAAATTTGTGTT
TTCCAAATCTGAATCATTCTGATCTATACTTGCAAAATAATCTGTAATATCTTAGTAATCTAGA
CACCATCATACTTTGGGCATATAAGATGCCAGTTGGTTGCAAATTTGTAGTTTTTAACATGTGT
TCTTATTGTAACATTAGAAAACATATAATGCATCATGTGCTTATTGTTTTCTCATTAAATATTT
GAATCATCAAGTTTTATAAAGATGTCTTATTTTGTAGATCACTGTCTAATAAAAAAGAAAAATC
TTATTTTGTAGGTACAAGGCATCTGGTATTAGATTAGATTCTGGTGATCTGGCCTATTTGTCTA
TTGAGGCCCGTAAAGTGTTCCGTACACTAGAAAAGGAGTTTAATGTGCCCGCTTTTGGGAAGAT
GATAATTACTGCTAGCAATGACCTGAATGAGGAAACAATTGATGCCCTGAACAAGCAGGTAATA
AAATTGCCAAGAACTTCATTGTGGCATTTATGTTATCTGGCGCATTTGTGTGTGCTCCTGTGGA
CTACAGGGCTTGTTTTTATTTCCAATCCTTCTAATATGATTTAAATTTCTATTTATTTCAGGGC
CATGAAGTTGATTCCTTTGGTATTGGAACTTATCTAGTAACATGTTATTCCCAGGCTGCTCTTG
GCTGTGTCTTTAAGCTAGTTGAGATAAACAGTAGACCTCGTATCAAACTTTCTGAGGATGTGGC
TAAAGTGGGTCTATTTTTTCTTTTCATGTTGACAAAGAATTTCATTTCTTTTTGTTTACTTATA
GTGTCATGATGGGTTCCAGGTATCCATTCCATGCAAAAAGCGATGTTTCAGATTGTATGGAAAA
GAAGGCTACCCCTTAGTAGATATCATGATGCGTGAAAGTGAACCATCACCGAAGGTAACTATGA
ATATTGTCCAAATTATCCCTATTTGTTACCATGCAATGCTGCTATCACTTATATCCTTTGCTGA
CCCTTTTTTATCTACAGTAATTATTCTCGATTATTAAACTGATCTTGTTTACACCTAACATTTC
AGGCTGGAGAACGAATCCTTTGTCGTCATCCATTCCTTGAATCCAAGAGAGCATATGTTGTCCC
CCAGCATGTTGAGGAGCTCCTACAATGCTACTGGCCTGGTACATCAAGTATGTATCGTGGATCT
TTCTAAAAAATGATAAGTTCTTCAGTTGACATGGCTAATTTTGAATTGTAAAGGAACTAATCAG
AGTTGGTATTCTATCCTACTGCTTATTGTGCAACAATTACATATGCATATGTGTCCCTTTCAGA
TAAACCTAGGGTAGAGTTACCCTCTCTAGAGGAGATCAGAGGGCGCTGCATGCAACAGCTTGAA
AAACTTCGACCAGATCACATCAGGCGGTTAAATCCAACACCTTACAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021