Detail information of BGIOSGA016430_circ_g.2


General Information
CircRNA Name BGIOSGA016430_circ_g.2
ID in PlantcircBase osi_circ_005461
Alias 4:19220719|19225326
Organism Oryza sativa ssp. indica
Position chr4: 19220719-19225326  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016430
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016430_circ_g.1 BGIOSGA016430_circ_g.3 BGIOSGA016430_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA016430-TA:13
Experimental Information
Sanger sequencing for BSS   Yes
PCR primers for BSS    F: AACTTCGACCAGATCACATCAGG
R: TGCATTCTTCAAGACCAGCAA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAGTTACCCTCTCTAGAGGAGATCAGAGGGCGCTGCATGCAACAGCTTGAAAAACTTCGACCA
GATCACATCAGGCGGTTAAATCCAACACCTTACAAGgtttgatctgtacttcaggaaaaatcca
tttggtggagaattcactgtttttgctggtcttgaagaatgcattaagttcattgcaaatttta
agttcaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTGATCTGTACTTCAGGAAAAATCCATTTGGTGGAGAATTCACTGTTTTTGCTGGTCTTGAA
GAATGCATTAAGTTCATTGCAAATTTTAAGTTCACAGAAGATGACATTTTGTTCCTGCAATCAG
TCATGCCAATGTGTGAGGTAAGCTGTTACATAAAATTATCTTTCTGTCTTAAAGTGGCATATGG
TTCTGATATAAGCTGCTATACTATCTAAAATCCTATTAATTTGCCATATTTATAGAAAGGCTTG
TTAGCATAGTCTACAAAAACATTGCCATTTCAAATGTCAGATCTTTAATGTATCACTTGTTAGT
TGTTTGCCATGATAAATGTTCATTTACTGATGTGATATGCGATTCTAGGATGCGTTCTTTGATT
ATCTCAGGAAAACCGACTGCTCTGATGTGGAAGTGTACTCCATTCCTGAGGGTTCAGTGGTTTT
TCCAAAAGTTCCTTTGATGCGAGTTGAGGGTCCAGTTGCTGTAAGTACAGAGTCCCTTAACAAT
TGTTGTACCTAAAACATGTTGATCATGAACTTCTGGTTTGAACATTAACCAGAACTTTGCATGG
TTCATCAGGTGGTCCAACTACTTGAGACACCGTTTGTAAATCTTATCAATTATGCCTCTTTGGT
AACAACAAATGCTGCGAGACACCGCCATGTTGCTGGAAAATCAAAAGTTTTACTGGAATTTGGT
TTGAGACGAGCACAGGTGTGATCTTGAACCATCCCATTTACACTGCCATTTTGATTTTTGTATG
GTACACAAGTATTTGGTATTTCTGTGCATGAAACATAGCTGTGGATTTGTATTGACAGGGGCCT
GACGGTGCAATAAGTGCTTCAAAGTATTGTTTCATGGGAGGTTTTGATGCAACCAGGTGGTAGT
TCTTCCATGGTTCCATTTACAAATTTCATTTATAAATTCTGCATATCCATGTTACCTCTTTGCA
ACTATACTTTCACAAGAAGTATATTTTGAATCATGCTTGCCTTGCTTAGTCCTTTTTCCCTCCT
TAACAAAATTTTTGTTTTTCGTCCTCAGAATGTGAAAAACTACTGTTGTAAACCATTTATTTAA
TTCATCGTCCTCTCATTATTTTGCAGTAATGTTTTGGCTGGAAATCTGTTTGGCATACCACTTC
GCGGAACACATTCTCATGCTTATGTTAGCTCATATATGGTCAGTAAATACCTTTTTGTGTCACC
GCAAAAGAAAAATTCTTTTTGTCAACAAACATAATCCAGTATTTTCTCCTCTATCATTGGAGCA
CTTTATGTCTCTATTGAAGTTTGTATGCTGTGGTTGCATTGACTAAACACAACTTTTAGTTCTT
CTCCACATCAGTAGATGAGCCCAAATGTTGTGTCAGTTTCAAGTTGAAAGATGTGGTTTTTCTT
CACTCAAATTATCTAGTTGACAGTTGAGACTGCCTAGTGTTACAAAATGTTGCAGAACACAGTT
TTGTTGTTGTGGCAATTGAATCCAGATTATAATCGATGAAAAAAAAAGGCACCAGAGTCTATGT
TTTGTTGAATAACCTGCACTTGCTTTGTTTTTTATCCTTTGTTAGCCATGCTAGTTATTTTTAT
GCTCACTCCTAGCTTGCTGATCTACTGAGTTTTTCCTGTCTTTGCTTGATACTTATCTGAGGTA
CATAGATAATCATTTTATCAACATAGCAACTATTTTTCTTTCTGCCATTAACGTGTGATGTGCA
TGACAGTTTGTATTATCCCTTGTATTTGCAATAATAGAGAGTTATATTAGATATCATACATTCT
GGAGACTTTTTCTATTTTTATACCACTTGTTGCTAGTTGTTGCCTGAGCTAACAATCTTTTCAA
CCCTTTCAGAGCCTTGATGAGATCCCAGACAAGTCCCTCAAGAGCAAAGATGGTTCAAGAGTCT
GCAAAGATTTTGTTAGTTTGGTAAAAGAGTGGCTTCAAAAGATTCAGGTATAGCTGTAAAACCT
CGTGGCATTGCTTTTACTTGCTACAGTACCCTTATGTTACTATTTTGTTGGTTTCAGTTAGCAG
ATTCGTTATGTGGTGTATTTGGTGAGACAAATCAAAGTGAGCTGGCAGCATTTGCATCCTATGC
ATTGGCTTTTCCGACCAATTTTCTAGCTCTTGTGGACACATATGATGTAAGTTGTTGCGATGTT
CTTTAATCATTTTATTGTTGAGATGCATATATGAGTGAGTAGTTCTGAACCTTTTTTCTTTTTG
AAACAGAAAGTAGGTATGGAACTTCACATATCATACTTTGTCAATAAACAACTTGACAAAAATC
TCATATTTGTCCTTTGGAGTCTTCCTTTTTTATGCTAGCATTTCTCAGTGGCTTCTTTTACAAA
AAATCATTTTTCTTTGAACGTTTTGCAACCTGGATTTTACAAACAGAGATGCAACCAGTTTTAA
GTGTGCAAGTATTTAGACTTGATGATGATGTTCAACTATGGTGATTTCGATGTCATAATTAATC
TGGCACTCCTCCAGGATGCATAAACTCTGAACAATCAGTGTGTACATCTGTAGCCTTTGTTTCA
TATCATTTGATAGTCTGCTGTGCGTAGTGACATGCCCTTACCGGTACCCTGTAAGGCTGTGTTC
GTTTGGACGTTTTCCCAGCGCGCTACAGTGTTTTGCCCCGCGCACGCTTTTCAAACTACTACAC
GGTGTACTTTTTTGCAAAAAGTTTCTATACAAAAGTTGTTTAAAAAAATCAAATTAATCCATTT
TTGAAAAAAAAATTAGCTAATACTTAATTAATCACGTGTTAATGAACCGTTCCGTTTTCCGTGT
TACTGTAGCGCGCTGGGAAAACGTCCAAACGAACACAGCCTTAGTCTGTAACTCTTTAGTGGTG
TGCAGATTTTCAATGCATTTATGCCGCACATGTACGTTCTATGTTCTCTAGCTTTAACTCACCA
AGTTTTCCCTTTCAGGTTATGCGAAGTGGAATTCCAAACTTCTGTGCAGTAGCGCTAGCACTCC
ATGACTTAGGGTAGGTCAAATCAAACGTATCCTTGGCTACTGTACATTTGCATTTTGATTGAAG
CTCGATTGAATTGGAGCTTATCTTCTCATGGAGATCTTACATGACAGTGTCTTACAGAAAATAT
AAATGAAGTTAAAGATTAAGGCAAAGTTCACCCAATACAATCCAATTTAAGATGGTACAAGTTT
ATATCAAATTTGTGTTTTCCAAATCTGAATCATTCTGATCTATACTTGCAAAATAATCTGTAAT
ATCTTAGTAATCTAGACACCATCATACTTTGGGCATATAAGATGCCAGTTGGTTGCAAATTTGT
AGTTTTTAACATGTGTTCTTATTGTAACATTAGAAAACATATAATGCATCATGTGCTTATTGTT
TTCTCATTAAATATTTGAATCATCAAGTTTTATAAAGATGTCTTATTTTGTAGATCACTGTCTA
ATAAAAAAGAAAAATCTTATTTTGTAGGTACAAGGCATCTGGTATTAGATTAGATTCTGGTGAT
CTGGCCTATTTGTCTATTGAGGCCCGTAAAGTGTTCCGTACACTAGAAAAGGAGTTTAATGTGC
CCGCTTTTGGGAAGATGATAATTACTGCTAGCAATGACCTGAATGAGGAAACAATTGATGCCCT
GAACAAGCAGGTAATAAAATTGCCAAGAACTTCATTGTGGCATTTATGTTATCTGGCGCATTTG
TGTGTGCTCCTGTGGACTACAGGGCTTGTTTTTATTTCCAATCCTTCTAATATGATTTAAATTT
CTATTTATTTCAGGGCCATGAAGTTGATTCCTTTGGTATTGGAACTTATCTAGTAACATGTTAT
TCCCAGGCTGCTCTTGGCTGTGTCTTTAAGCTAGTTGAGATAAACAGTAGACCTCGTATCAAAC
TTTCTGAGGATGTGGCTAAAGTGGGTCTATTTTTTCTTTTCATGTTGACAAAGAATTTCATTTC
TTTTTGTTTACTTATAGTGTCATGATGGGTTCCAGGTATCCATTCCATGCAAAAAGCGATGTTT
CAGATTGTATGGAAAAGAAGGCTACCCCTTAGTAGATATCATGATGCGTGAAAGTGAACCATCA
CCGAAGGTAACTATGAATATTGTCCAAATTATCCCTATTTGTTACCATGCAATGCTGCTATCAC
TTATATCCTTTGCTGACCCTTTTTTATCTACAGTAATTATTCTCGATTATTAAACTGATCTTGT
TTACACCTAACATTTCAGGCTGGAGAACGAATCCTTTGTCGTCATCCATTCCTTGAATCCAAGA
GAGCATATGTTGTCCCCCAGCATGTTGAGGAGCTCCTACAATGCTACTGGCCTGGTACATCAAG
TATGTATCGTGGATCTTTCTAAAAAATGATAAGTTCTTCAGTTGACATGGCTAATTTTGAATTG
TAAAGGAACTAATCAGAGTTGGTATTCTATCCTACTGCTTATTGTGCAACAATTACATATGCAT
ATGTGTCCCTTTCAGATAAACCTAGGGTAGAGTTACCCTCTCTAGAGGAGATCAGAGGGCGCTG
CATGCAACAGCTTGAAAAACTTCGACCAGATCACATCAGGCGGTTAAATCCAACACCTTACAAG
Conservation Information
Conserved circRNAs osa_circ_023840*
PMCS
Functional Information
Coding potential Y
Potential coding position 19220852-19225308(-)
19220850-19220721(+)
Potential amino acid sequence MTDCRNKMSSSVNLKFAMNLMHSSRPAKTVNSPPNGFFLKYRSNLVRCWI*(-)
MPMCEDAFFDYLRKTDCSDVEVYSIPEGSVVFPKVPLMRVEGPVAVVQLLETPFVNLINYASLV
TTNAARHRHVAGKSKVLLEFGLRRAQGPDGAISASKYCFMGGFDATSNVLAGNLFGIPLRGTHS
HAYVSSYMSLDEIPDKSLKSKDGSRVCKDFVSLVKEWLQKIQLADSLCGVFGETNQSELAAFAS
YALAFPTNFLALVDTYDVMRSGIPNFCAVALALHDLGYKASGIRLDSGDLAYLSIEARKVFRTL
EKEFNVPAFGKMIITASNDLNEETIDALNKQGHEVDSFGIGTYLVTCYSQAALGCVFKLVEINS
RPRIKLSEDVAKVSIPCKKRCFRLYGKEGYPLVDIMMRESEPSPKAGERILCRHPFLESKRAYV
VPQHVEELLQCYWPGTSNKPRVELPSLEEIRGRCMQQLEKLRPDHIRRLNPTPYKV*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description leaf senescence (regulating to parental gene)(validated)
Other Information
References Huang et al., 2021