Detail information of POPTR_0010s18980_circ_ag.3


General Information
CircRNA Name POPTR_0010s18980_circ_ag.3
ID in PlantcircBase pop_circ_002827
Alias Chr10:18026306|18031131
Organism Populus trichocarpa
Position chr10: 17047814-17052633  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0010s18980_circ_igg.1 POPTR_0010s18980_circ_igg.2 POPTR_0010s18980_circ_ag.1 POPTR_0010s18980_circ_ag.2 POPTR_0010s18980_circ_ag.4 POPTR_0010s18980_circ_ag.5 POPTR_0010s18980_circ_ag.6
Support reads NA
Tissues stem cambium
Exon boundary   NA-NA
Splicing signals   GA-AT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATAACTGAATTGGCTCTGGGGTTAGAGTTATCAGGGCTGCCGTTCTTTTGGGCTTTCAGGAAC
CGGGATGACTCGGTCAGGTTACCAGATGGATTTGAGgaacgagtaaaaggacgtggagtggtgt
ggacgagctgggcaccacaactaaggattatggctcatgaatcggttgggggttttttgactca
ctgcggtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAACGAGTAAAAGGACGTGGAGTGGTGTGGACGAGCTGGGCACCACAACTAAGGATTATGGCTC
ATGAATCGGTTGGGGGTTTTTTGACTCACTGCGGTTATAGCTCAGTTATAGAGGCACTCTCCTT
TGGACTTGCTTTGATCATGTTGCCTTTCGCTATAGACCAAGGATTAATCGCAAGGGTTTTTGAA
GGGAAGAAGGTTGGGATAGAAGTGCCGAGAGATGAGCAGGACGGGTCGTTTACGAGGAACTCGG
TAGCTGAGTCACTCAGGTTGGTTATTGTTGACAGGGAAGGATCCGCCTATAGAGAAAATGCCAA
GCAGCAGATGGTAACATTATTTGGTGATAAGAGTATCAGCGATCGATGCATGGACCAATTTGTT
GCCTTCCTACGAAGTCATAGAAAATTGCCAGCAGTGATTAACAATGACCTGCCCACGCACTCGC
CAAACTGACACGTGTCAATGCTTATGTGTCGTGTCATCTGGTTCTTCACTAGGTTTTTTTAAAA
AGAGTCCGGAGGTTTAGACTCTAGAGTGCCTTTTTACTGTGTTTTTTTGTTTGTTTGTCTGTTT
ATGTAGTGTATAAATAGACCATTGAGTCGCTTCCTGAAACTAAAATTTGTTTTCGAGAAATTTA
TGTATTATATTATATCTAAATATTTACTTTATTAATTATTAACAAAAAAACTGGAACTTCAAAA
AACACAAAGGTACTACAAAATTGAAAGCCGTGATTGTCGGCAGGCATTTGCGAAGAGAGGGGCC
ATCAGCCATGGCCCGTAGGAAGGAGGACTGTGGCTAAGATTCCTTTAGGTTTTTTACCTGTCTC
CCTCACTAATATTTTACTTTCTTCTGAAAAAAGGAATTGCACATTAATCTCATATCTAATTTCC
AGCAAATTCATGCTAATTAAAAATCATATTTTCATATTGAAACATTTTAACACAGAAAGATCCA
CCGACATTTGAAAATTTCCCTTTCTGTTTATTACACAACTTTCTCTGGAAAATAAATAGTCAGG
TTCACAGAAAGCTTGGGGAAATTTCTCACCGATTAGTCACTGATAGAAAGCCTAAACACGTGTT
CTGCAATGATCTGCGCAGATCCGTTAATCTCCGGTGGGCGGTCATTCACGAGGAAATTTAATTA
CGAGCGATGGCATTATTGGCATGCCCTACTCAATTATTTTTTGAGAAGTGACATCTTAACTCCC
TATGCTCCAAAGGAATACCTACCTACAAGATCCCAAGCCAAGAGAAAATGGAACGAAGATGTCC
ACATCAAATATATATATATAAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAACGAAGATG
TGAAATGCAGGAGTCCAGATCAAATATATATATATATATATATATATATATATATATATATATA
TATATAAGATGGAGCCACGAAAAGCCACGTTAGGAAGGAAAATAAAACAAATCAGGAGTCAAGA
TCGAAGCCCACACTTGAGAGAAGATAAGATTATAATTGAGCTGCTGGCCTGAGGCCTGTGGGTG
TGCATGCACCAGAGACAGTTGGATAGGAGACAGACAGAGATCAGACATCTTGGTTTTGCATTAG
GTCCCCATGTCAGTAAATTTCAAACAATTTAAGACAGAGACAGAGAATTTATTAAATTATTTTT
TTTAATAATTTAAGACCATATAATTTTAAGATTCAATAAATTTAATTTCCTTACTTTTCTCTGT
GTCCGTCTCTAATTGTGAGCCAAAGCTGTCGCAAATCATCCATTTTGGATAATAAATACAGTGT
GCCACACATTAAGCCCTTAACTCAAAAAACCATGGGTACAAGATTATAACAGACCCACAGAGAG
AAAAGCAAAAAATAAAATTAAAGCTGAGATTAATTCTCAAAAACATATATGATGAAGCATGAAA
TTGAGATTTGTTTTTTTAAAAAAATCAAAACTAATCTATGTTAACCATTAAAACTTGTAACCTT
AATCAAGAGGCCAAAACCGACCATATAGAAGACAGATCTTGAAAACTACAAAGCAAAATTCTTA
ATAAAAAAAATATGTTTAGAGATGAAATTAAAAAAATATTTAAAAAAAACAATGAAAAAAAATT
AAAGTAAACTCGAGATCAAGTTAACCCCACGACAAGGAAAGTGAAAAAAAAAAGCATGAAGACC
AATATAAAAAAAAATTTGAAGGATAAAATTGAAAATAAATCAAATTTATAAACGAATCTAGAAA
ACAAATATCAACCCATATTAATTTTTGAAACCTGTGACTTGGCCATAAGACTGTAGCTAACCTT
ATAGAAGTGAAAAAACAATGAAAAAAAATTATCAACAAAAAAAATATCAAGGAATTAAATTGGA
ACAAAAATACAATAAAAAAGCATTCTAAGCAAAACAATACAATAATAAAAAATAGGAACCAATC
TCGATATAAAAATAAATTTAAATCAAATACTTAGAGATACAATTAAAAACAAAGTTTAATTAGT
AAAAAAGCAAAAAAAATCAATACATTAAAGACCGGGTTTGATATGAATATCAAATTAAAATAAT
GACAAAGATAAAAATAAAAATAAAAATTAATTAATATAAGATAAAAAAACAAAAAAACGTAATA
ATAAAAAAATTTGATTCAAAGGATATCAAAGTTGTTTTACTTTGTATAATGTAAAAAGACAAAT
ACATCCCATTAATGTGTTAATGCCCAATAGACCCTTATTAAAAGACCAAAATAGTCTTTAGGTA
TTTGGTTTGCTTTTAGAAAGATAAAACAGAAATGCTGGTGTATTTATTTTTTCAGTTAAAAAAT
GCTTTAAATTTAATTATATATATGTTTTTAGATTGTTTTGATGATAAAAATAACTTTTAAAAAA
TAATAAAAATCTATATTAAAAACTTTAAAAAACATCTATTAATACAATTTCAAAGAGTACGAGC
CAGCTTCCCCATCAAATACTCGTTGTTATACATAGACAGCAAACAACATACAGAATTCACTTGC
GGCTCTGTACTAGAGACAGCATCAGTCAATACCACCAGATCTGGAAGAATTTTTCATTCGCAGC
CAAAACCTACCAATACTAATATAACTCGTAGTCAATAGCATCTTGCAACGACGATCCCTCCGTA
TCTTGTGATCCTGCCCTGCAAAGAAAAGGGGCAGTGATAAAATATAAATGTAAAATACAATACA
CACACACACGCACCAATCCATAATGATCATCTGCAATGCCTTGCACCGACCCGTTTGGTTGCAT
AACTAACCGTTGTTGCAAGTAAGGTACGCTCGTTGACGAACGGCGACGACGTTTTATCTAAAAT
ATACATGAAATATATTTATTTATTTAATCTTTCCTGTTTTTCTGAGAATGAAATGAATTGGCTT
GATTATTTACACTGCAGATGAATGAACCCTTTGTTTTCTGCAGAAGAGAAAAGGCCGAAGGGGG
CATTTTGAATTTGGCACCCCTTAGTTTTGGGCTTCTGGCGGTCCCATGTCCAGACCATCCTTGG
GCCTTTTGTTTTTGGGCTACACGAAGGGAAGTTGAGCGCTTATGCTGAAATCTTGTGCCCTTGT
CTTCAGGGCTTCAAGCCGGCCATCCCTATGGCTAGGAGTCAGGAACTTTAATTATCGCGCCTAA
ATTTTAATTTGTTTTTTTTTAAGTTATAAAACAGATTGTGAGAGTTTTTTAGAAAAATAAAATA
ATCTTTAAATAAAACGTGAAGCATTATCTTTATCTGATTTAATAATAAATAAACGAATTTAATA
GTATGGCTCATTTTTCATTAATTTATAATGGTTTAGATTCTTTTTCATATCTATGTAATAACCA
GTTTTCTCATATGTATTCTTAAATTAGAGAATTTCGAAGAGCTTTTATTTCTTATCCATATAAT
AGAATGGAGTGGTTGTTGTTATCGTCCTCGTCGTCATGATGGGAGGATAGTAATATATCAGGTA
TTAATGAAGTCATCGATTTTCATGTAAAAAAATTTACAATAATAATTCAATTTCGAAATAAAAA
ACTCTCATTCGCTAGCTATATATATATATACACATGGAATACAGGATAAGAAGCTAAAGCCACA
AAAGCATTTAGATCAGGAAGTATCAATGGATGAACCTCACGAGCTCCACATAGCCATGTTCCCA
TGGCTTGCTTTCGGTCATATAATCCCATATCTAGAGATCGCCAAGCTAACATCCAACGTTTACC
AACTATACCTCCAAATTTAACACCGCGAATCAATTTTTAATGCATGGACCATATCCTTCTCTGG
ACCATCATCCTCAGCTATGCTCAACGGCGACGATCCAAGGACCGAACCGCAACACCTCACGGTC
CCTCCAAAGTGGGTCACATTTCCCTCTAAAGTGGCATTTCGCATCCATGAAGCTAAGCGGTTTA
TGGATCAAATTGAAGCGAACAGTTCAGGTGTCACTGATGTATTTCGTTGGGGATCCGTGCTTGC
TGGCTGTGATGTTATAGCCGTAAGGAGCTGCTTAGAGCTAGAGGCTGATTTCATAAGACTTGTG
GAAGACCTTCACTGTAAGCCTGTAATCCCAGTAGGCCTACTGCTACCATCTACTCAGTCTCGCG
AGGGCGGAGTGGACGAAAAATGGGTTACGATCAGTGAGTGGCTAGACAAGCAAACCCAAGGATC
TGTGGTTTACATAGCGTTCGGAAGCGAGTTAACAATAAATCAAAATGAAATAACTGAATTGGCT
CTGGGGTTAGAGTTATCAGGGCTGCCGTTCTTTTGGGCTTTCAGGAACCGGGATGACTCGGTCA
GGTTACCAGATGGATTTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.780999239
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zheng et al., 2020