Detail information of BGIOSGA016140_circ_g.2


General Information
CircRNA Name BGIOSGA016140_circ_g.2
ID in PlantcircBase osi_circ_014238
Alias Chr04:15491335_15492899(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 13163268-13164832  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA016140
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016140_circ_g.1 BGIOSGA016140_circ_g.3 BGIOSGA016140_circ_g.4 BGIOSGA016140_circ_g.5 BGIOSGA016140_circ_g.6 BGIOSGA016140_circ_g.7 BGIOSGA016140_circ_g.8
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA016140-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTGAATATATTAAGAAATCTTGTTCCGATTTCCAACCCTCCAATTGAAGTAGCTGACTTGATC
AAGCTGATATGCAAAATTTTCTGGTCATCCATTTATgaagaaaaacatataattccagaaagtg
acaagtccatggtccgtgagaatatattgggttttgttactcaattacctccattgctaaggta
tttctcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAGAAAAACATATAATTCCAGAAAGTGACAAGTCCATGGTCCGTGAGAATATATTGGGTTTTG
TTACTCAATTACCTCCATTGCTAAGGTATTTCTCACTGTCCACCTACCCTTTTCTTAATGAACA
ACATTTTTGTGCCTCTCTCCAAATGCTATAATCGTAGTCCTTATGCTTTTGGTGTACTGTTGTT
TCTGAATTCTAGATAAATTGACTTCTAAGGCATTTTATTTCAATACTGGAGTACTTTTCTTCTT
ACAATTGATGTCAATCTATAAATTCTGGTTGGCCGTCTCACAAAGTCACAATGTTTGCCTACAC
ATATTATTGAATGCTGACATTTGTTTAAGTAATTTAGACCCCAGCCAATTGGAGTTAAGATGAG
TCTGAAAATACCATTTTTGACTCATGTTTGTACTTTGGATAGAATATATTTTTGGTCCTTGAAT
TCGCAAAGTTCATTTTCACCCTGCCTTTAAAAACAGGTTGTTTACAACCTTCAAAACTGGATAA
GTAACACCTCGATCCCTTTTCCACTGCCATACCAATCAAAACCACTGTGGAATAGGGTTCGGGC
CTTCAAGGTGTTATCTGTTCAGTTTTGTTAGACCTATATGACTGTTTCAGCATTTCTAGATATT
GAATTTAGGTTAGTTTTTCACAGAAGCATCATAAGTTTGAACGGAATGCACTGTCAAGTTCTAC
ATTGTAAACAATAACTTGTGGTACTTTTATTTTTGATGAGTATTTCAGTGAAATTTGTAGTGGA
TGTGTTTTTCCTGATGACGAAGCACAATATTCTTCAGTACTGATGGTTATGAAATGTGCATACA
AGTAATTGACACATATTTCATGGTCTGTAGAGCCCAGCTTGGAGAAAGTATCAAGACCTTGATC
CTTGCAGATTATCCTGAGCAGTGGCCTAGTCTTCTTCCTTGGGTAACACATAATCTAGAATCAC
AGGATCAAATATTTGGAGCACTATATGTGCTAAGGATTCTTGCCCGGAAATATGAGTGAGTCTA
AATGCCAGAATTCTACCTTCTTTTTTATTTGTTTGTATTCACTCTATCCGTCTTCCTATTTTGA
ATTATTTTTCTGTAACTCCAAAAAACTTAGGATTTACGTGTTTCTGTTACTCTGCTGTGAAATA
TCTCTACACATCATGTTATTCACTCTATTTGTTTTATTTGCTGACTTTGTGATCTTTATTGTAA
TTTAGAGATTACCCAAAGAAATAGTGTAAAGATAACATTGTTGTTATAGTTTTCTTAAAATGAT
GGGTGCACAACATAATTCTTTGCTCTATGAACATTTTTCTGGACAACATCATACAGTGCTTACC
TTTTTGTCTTTTGTTTATGTGAGCTGCCACACTATCTCATTACTTTCTTCATGATTAGGTTCAA
GTCAGAGGACGAGAGGATACCTTTGTATCAAATTGTTGAGGAATGCTTTCCTCGTTTGTTGAAT
ATATTAAGAAATCTTGTTCCGATTTCCAACCCTCCAATTGAAGTAGCTGACTTGATCAAGCTGA
TATGCAAAATTTTCTGGTCATCCATTTAT
Conservation Information
Conserved circRNAs osa_circ_023425
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021