Detail information of Os04g0337201_circ_g.2


General Information
CircRNA Name Os04g0337201_circ_g.2
ID in PlantcircBase osa_circ_023425
Alias Os_ciR1977
Organism Oryza sativa
Position chr4: 15867326-15868889  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os04g0337201
Parent gene annotation Similar to OSIGBa0137O04.8 protein. (Os04t0337201-00)
Parent gene strand +
Alternative splicing Os04g0337201_circ_g.1 Os04g0337201_circ_g.3 Os04g0337201_circ_g.4 Os04g0337201_circ_g.5
Support reads 4/2
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0337201-00:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTGAATATATTAAGAAATCTTGTTCCGATTTCCAACCCTCCAATTGAAGTAGCTGACTTGATC
AAGCTGATATGCAAAATTTTCTGGTCATCCATTTATaagaaaaacatataattccagaaagtga
caagtccatggtccgtgagaatatattgggttttgttactcaattacctccattgctaaggtat
ttctcact
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 404
Transcript exons: 15867326-15867413,15868187-15868339,15868727-15868889
AAGAAAAACATATAATTCCAGAAAGTGACAAGTCCATGGTCCGTGAGAATATATTGGGTTTTGT
TACTCAATTACCTCCATTGCTAAGAGCCCAGCTTGGAGAAAGTATCAAGACCTTGATCCTTGCA
GATTATCCTGAGCAGTGGCCTAGTCTTCTTCCTTGGGTAACACATAATCTAGAATCACAGGATC
AAATATTTGGAGCACTATATGTGCTAAGGATTCTTGCCCGGAAATATGAGTTCAAGTCAGAGGA
CGAGAGGATACCTTTGTATCAAATTGTTGAGGAATGCTTTCCTCGTTTGTTGAATATATTAAGA
AATCTTGTTCCGATTTCCAACCCTCCAATTGAAGTAGCTGACTTGATCAAGCTGATATGCAAAA
TTTTCTGGTCATCCATTTAT

Genomic sequence AAGAAAAACATATAATTCCAGAAAGTGACAAGTCCATGGTCCGTGAGAATATATTGGGTTTTGT
TACTCAATTACCTCCATTGCTAAGGTATTTCTCACTGTCCACCTACCCTTTTCTTAATGAACAA
CATTTTTGCGCCTCTCTCCAAATGCTATAATCGTAGTCCTTATGCTTTTGGTGTACTGTTGTTT
CTGAATTCTAGATAAATTGACTTCTAAGGCATTTTATTTCAATACTGGAGTACTTTTCTTCTTA
CAATTGATGTCAATCTATAAATTCTGGTTGGCCGTCTCACAAAGTCACAATGTTTGCCTACACA
TATTATTGAATGCTGACATTTGTTTAAGTAATTTAGACCCCAGCCAATTGGAGTTAAGATGAGT
CTGAAAATACCATTTTTGACTCATGTTTGTACTTTGGATAGAATATATTTTTGGTCCTTGAATT
CGCAAAGTTCATTTTCACCCTGCCTTTAAAAACAGGTTGTTTACAACCTTCAAAACTGGATAAG
TAACACCTCGATCCCTTTTCCACTGCCATACCAATCAAAACCACTGTGGAATAGGGTTCGGGCC
TTCAAGGTGTTATCTGTTCAGTTTTGTTAGACCTATATGACTGTTTCAGCATTTCTAGATATTG
AATTTAGGTTAGTTTTTCACAGAAGCATCATAAGTTTGAACGGAATGCACTGTCAAGTTCTACA
TTGTAAACAATAACTTGTGGTACTTTTATTTTTGATGAGTATTTCAGTGAAATTTGTAGTGGAT
GTGTTTTTCCTGATGACAAAGCACAATATTCTTCAGTACTGATGGTTATGAAATGTGCATACAA
GTAATTGACACATATTTCATGGTCTGTAGAGCCCAGCTTGGAGAAAGTATCAAGACCTTGATCC
TTGCAGATTATCCTGAGCAGTGGCCTAGTCTTCTTCCTTGGGTAACACATAATCTAGAATCACA
GGATCAAATATTTGGAGCACTATATGTGCTAAGGATTCTTGCCCGGAAATATGAGTGAGTCTAA
ATGCCAGAATTCTACCTTCTTTTTTATTTGTTTGTATTCACTCTATCCGTCTTCCTATTTTGAA
TTATTTTTCTGTAACTCCAAAAAACTTAGGATTTACGTGTTTCTGTTACTCTGCTGTGAAATAT
CTCTACACATCATGTTATTCACTCTATTTGTTTTATTTGCTGACTTTGTGATCTTTATTGTAAT
TTAGAGATTACCCAAAGAAATAGTGTAAAGATAACATTGTTGTTATAGTTTTCTTAAAATGATG
GGTGCACAACATAATTCTTTGCTCTATGAACATTTTTCTGGACAACATCATACAGTGCTTACCT
TTTTGTCTTTTGTTTATGTGAGCTGCCACACTATCTCATTACTTTCTTCATGATTAGGTTCAAG
TCAGAGGACGAGAGGATACCTTTGTATCAAATTGTTGAGGAATGCTTTCCTCGTTTGTTGAATA
TATTAAGAAATCTTGTTCCGATTTCCAACCCTCCAATTGAAGTAGCTGACTTGATCAAGCTGAT
ATGCAAAATTTTCTGGTCATCCATTTAT
Conservation Information
Conserved circRNAs osi_circ_005383* osi_circ_014238
PMCS 0.124479838
Functional Information
Coding potential Y
Potential coding position 15867362-15867337(+)
15867364-15868854(-)
Potential amino acid sequence MVRENILGFVTQLPPLLRAQLGESIKTLILADYPEQWPSLLPWVTHNLESQDQIFGALYVLRIL
ARKYEFKSEDERIPLYQIVEECFPRLLNILRNLVPISNPPIEVADLIKLICKIFWSSIYKKNI*
(+)
MDLSLSGIICFSYKWMTRKFCISA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017