Detail information of Os12g0264500_circ_g.25


General Information
CircRNA Name Os12g0264500_circ_g.25
ID in PlantcircBase osa_circ_011075
Alias NA
Organism Oryza sativa
Position chr12: 9360641-9364706  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os12g0264500
Parent gene annotation Similar to CoA-thioester hydrolase CHY1 (3-hydroxyisobutyryl-coe
nzyme A hydrolase). (Os12t0264500-01);Similar to CHY1. (Os12t026
4500-02);Conserved hypothetical protein. (Os12t0264500-03);Simil
ar to cDNA clone:J013000A22, full insert sequence. (Os12t0264500
-04)
Parent gene strand +
Alternative splicing Os12g0264500_circ_igg.1 Os12g0264500_circ_igg.2 Os12g0264500_circ_g.1 Os12g0264500_circ_g.2 Os12g0264500_circ_g.3 Os12g0264500_circ_g.4 Os12g0264500_circ_g.5 Os12g0264500_circ_g.6 Os12g0264500_circ_g.7 Os12g0264500_circ_g.8 Os12g0264500_circ_g.9 Os12g0264500_circ_g.10 Os12g0264500_circ_g.11 Os12g0264500_circ_g.12 Os12g0264500_circ_g.13 Os12g0264500_circ_g.14 Os12g0264500_circ_g.15 Os12g0264500_circ_g.16 Os12g0264500_circ_g.17 Os12g0264500_circ_g.18 Os12g0264500_circ_g.19 Os12g0264500_circ_g.20 Os12g0264500_circ_g.21 Os12g0264500_circ_g.22 Os12g0264500_circ_g.23 Os12g0264500_circ_g.24 Os12g0264500_circ_g.26 Os12g0264500_circ_g.27
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os12t0264500-01:5
Os12t0264500-03:4
Os12t0264500-02:5
Os12t0264500-04:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGAGAAGGGCGAACACAAACTGTTGGTGAATGCTTACGTCGAGAATATAGAATGGTTTGCCAT
GTGATGCGTGGTGACTTCAGTAGAGACTTCTTTGAGgagagtatgttggtcttactggtgtaag
gttggatgctgctgaaatgcttgcttgtggcctagcaactcattttgtaccttcagatgtaggt
ctgccagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGAGTATGTTGGTCTTACTGGTGTAAGGTTGGATGCTGCTGAAATGCTTGCTTGTGGCCTAGC
AACTCATTTTGTACCTTCAGATGTAGGTCTGCCAGTGGCTTTTGAATTTTATGTTCAGTGTGGG
ACCACATATTTGTTCGTTTTATGTTTGGAAGTCAACTGTTATAACATGTCCTACACACTTGACT
TGTTCCAAGTGTGATTATAGATAACCCGAGTATTGCTGGTTTTCTAATTCCTACTAGTACACTC
ACTCTTGCAGAGGCTGTCTTTGCTAGAAGAATCACTTAAAAAGGTTGATACATCTGATCCATTT
GCTATATGTGGAATTATCGATCAATATTCGCAACAACCATCTCTGAAAGAAAAAAGCGCTCTGA
ATAGGTAAGCGTGCAATTGTCCAGACATTACCTTTTCATGCACGTCAAGCTTATTCTACTTCCT
TTGTGTACCCTGTAAAAATGACGTATCCTGGACAGGTGGGATATTCTGGTTCACACCAAGTAAT
CTTGTCGTACAAATCCTTTTTGGCATGTTAAATTTAGATTGATTAATCTACAGTTTTTAAGTTA
CTAGTAGCTACATAAAGTTCCATAGTTATACCATCAATATAAATTTCATGCAGGAAAAACTCCT
CATCCTGGGGGCGTGTTTGACCAATTTATCCTCTCCAAACAACTTTATTTTGGGTCCAAGCCTC
AGCCCCCAGATAGATAGACTAGTCCTTTTGAAATAATATTAGCTTGTAATGAAGGGCAGGTGGA
GAAATGTAAGGAATTGGAATGGGGGAGATATAGGAAAGCAACAGCATGCACTTCCCACATCTTG
TGTCTTCTTTCAATAGATGGATGGGCTTCAACTTATCAAAAAGCTTGGTAATGGTTGTCTGGCC
TGGCTTTAAATAAGCCGTTCCCTATGCCCTAACGGCCTAACCTGTTACCCGTGTGTTTTCTATA
TTCTCCTCATCTTTGAACTCATTTTTGGGTATTGCTTTTCTTAATCTTGTTTGAAGGCCAAAAA
GGCAATTGTCAGTGCATTGTAACTTGGAAGGACTTATTTTAGTTTGTCAGGAGATTCCATTTGT
TCCTCTTTCATTTCAAGGTTTTGTTTTCTCATTTCATTCTCAGGTCAACTTTTATTGCCTAATC
CATATCTGCTACTTCCGTCATATGATTGCAGGCTAGAAATCATCAACAAATGCTTTTCCAAAAA
AACAGTAGAAGAAATCATAGCCTCTCTTGTGAGTTATGCTAAGTCCTCATTTGCTTTCTATGGA
CTCTCCAGTTCTGTTGTGCTAAATTTGATGTGTATCATGTTAGGAACAAGAGGCTCCAAATGTT
GCTGATGAATGGATTGCTTCTGCAATCCAGTCCATGAGGAAGGCTTCTCCTACTAGTATGAAAA
TATCCTTGAGATCGGTATCCTCTCAAACATTTCCAAAGCATACGTCTTTATGTTACTCAAGTCA
TTCTATCTTGGTGCCTTCTGATGCAAATTATTGTAGTGTAAGGCACTACTATTTATTTAGACCC
ATCAATCCTTTATATGGTTTCATATGACCAGTATTTATATTGCTCAAGCGCATACTTCAGATAG
CTTTATGAACTGAACCCTACTCTTTTGTCTTGGCAGTTGGCACAACAGATCAGCCCTATAGCCA
AAAAAACAAACCTTCTAAGATTATAGCTTTTGCATAGTCAAATTGCATGTATGGGCATACCAGT
TCTAAAAGCTTTGTAAATGTCTTTGAAACTAGTCGTTGGAGGGAAGACAAGGCTCGTTCACTCC
ACAGAAGAGTACATGTGCTAGAAAAGGCAGCCAGCTTAAAAACACCAACTACTTTCTTAAGCCT
TATTTAGTTTGGTTGCCTACGCTGATCTCCGGCGTGCTATGCAACACCCCCTGCTTGCTTCTTT
CTGTTCGACTTGGAGCTTGCAGCCTCCCTACCCTTGCTTATGACCTATTCTTAATAGAACCGAT
CTGATTTTCACTACAAGAGGAATTCCGTGCTTCTGCCGGATCCTCCCTATCTCCTGATCAAGCT
TGTGTTGGTAAATACTCCCTCCGTTTTTTAATAGATGACGCTGTTGACTTTTAAACACATGTTT
GATCATTCGTCTTATTTAAAAATTTTATGCAAATGTATAAGATACAAATCATGCTTAAATTACG
TTGAGTGATAAAACAACTCACAACAAAATAAATTATAATTACGAATGGTCAAACGTCTGACAAA
AAGTCAACGGCGTCATCTATTAAAAAACATAATGTAGTACTCCCTCCGTCCCATAATATAGGGG
ATTTTGAGTTTTTGCTTGTAACGTTTGACTACTCGTCTTATTTAATTTTTTAAAAAAATATTAT
TTATTTTATTTGTGACTTACTTTATTATCCACAGTACTTTAAGCGCAACTTTTCATTTTTGATA
TTTGCAAAAAAATTTTGAATAAGACGAGTGGTCAAACGTTGCAAGCAAAAACTCAAAAGCCCTC
ATATTGTGGGACGGAGGGAGTATTGTTTAGTATGGCCTATAGTAGTACACTGTTTGGGACAGAG
TTAGTGCCCTTCTCACAACATCCCGTCTGGCGGAAACTATGGAGGGGGTGGCTAGCGCGCGCGT
GGGCACCAGGAAAGTAGCTGGCGAGCATTCCCCCCTTCCCTTTAGTCTTAACTACCTATATTAG
TTAATATACTTAACAGTAATGATAGTAATTAGGAAAGATTCGGGAGATTTTTTTTACTAACAGA
TTAAAAAAAATTTAAGTTAGATTTGAAAACTTTCGATTTAAGTTTTAAATTTTAAAGTCAAATT
TTAAAAACTTTCAACTCATATTTGAAAACTTTCAACTTGAGATTTGAAAACTTTCAACTCAGAT
TCGAAACTTTCAACTCAAGAATCGAGATTCGAAAACTTTCAAGTTCGGATTTGAAAATTTTGAA
AACTTTCAATTTGAGATTTGAAAACTTTCAACTCGAGATTCAAAAACTTCCAAATGCAGATTTG
AAAATTTTGAAAACTTTCAACTCGAGATTTGAAAACTTTCAAATCGAGATTTGAAAACTTTCAA
GTTCAGATTTGAAAACTTTCAAACTCAAAATATGCTAAAGATAAAAAAAAATCAGAAAAAAGTG
AGAAAAAAAAGGAAAAAAAGGGTAAAAAAAACGAAAAAAAATCGTAGCGGAGGCGCGCGCACCG
GCGCAGCGGCGCTGTTCCTTCTTGGCCGGAAACGCGCGCCGCCGGCGCGCTCGCTACAACTAGC
GGAACAAAGCAGTTAGATGGTTCACTTTGTATAACCACTACAATTTTGACAGAAAATAGTGTTA
TGGTTAGTTTCTAGCCTTTTAAGATCATGTGACCTATCTTTTGGGAGTTCTGGTCTTTTTCACC
AGGCCGACAACGAAGGAAGCCCTGACCAATTTTATTAAGATCAAGAGGAGTAAAGTATTGTTTA
CAACAAACATGGTTGTTTAGGGATCACCCTAACACAGGAACACAACTTAAAAGCTCAGAATTGG
CCCTAAGTCCGGGAGAGGCACAGAATTGGTTGCTGCCACAACAGGGCAGCCCTCTATCGGCGCA
CTTCAGTGATCAACATTCCTCCCAAGCATGCATCACGCTAAGTCCATTCTTCTATGATGCAGCA
GATTACCTCAGAGGCCGATTTGCTGGCACCGTCAAACACCTGAGCGTTCCGTTCTTTCCACATT
ATCCAAGAGATTAGAATTACTACTGCGTCAAATGGGAGTTCCAATCTCACCATGAGCTTCGAGG
TGTCAAACCTCCAGCTATCACTACCTACTAAGGTCTAAAGTGGAGCTTAGTCTCTAAGAAAAGT
TTGTTTTACACCTAACATTCAGTAGGGAAGGTCTTTGTTTTACTGTAGTATATGTAGTTCGCGA
GACGCTAGCCATCTGTGCCCCCATTATGTTCTTAGCTTGTTGTATTTACTGTGAGTTCAGATAA
GAGAAGGGCGAACACAAACTGTTGGTGAATGCTTACGTCGAGAATATAGAATGGTTTGCCATGT
GATGCGTGGTGACTTCAGTAGAGACTTCTTTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.222449691
Functional Information
Coding potential Y
Potential coding position 9360686-9360664(+)
Potential amino acid sequence MLACGLATHFVPSDRLSLLEESLKKVDTSDPFAICGIIDQYSQQPSLKEKSALNRLEIINKCFS
KKTVEEIIASLEQEAPNVADEWIASAIQSMRKASPTSMKISLRSIREGRTQTVGECLRREYRMV
CHVMRGDFSRDFFEESMLVLLV*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017