Detail information of Zm00001d045574_circ_g.9


General Information
CircRNA Name Zm00001d045574_circ_g.9
ID in PlantcircBase zma_circ_005842
Alias seedlingd_test_circ_000341
Organism Zea mays
Position chr9: 27077707-27082608  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d045574
Parent gene annotation Sec14p-like phosphatidylinositol transfer family protein
Parent gene strand +
Alternative splicing Zm00001d045573_circ_ag.1 Zm00001d045573_circ_ag.2 Zm00001d045573_circ_ag.3 Zm00001d045573_circ_ag.4 Zm00001d045573_circ_ag.5 Zm00001d045573_circ_ag.6 Zm00001d045573_circ_ag.7 Zm00001d045573_circ_ag.8 Zm00001d045574_circ_g.1 Zm00001d045574_circ_g.2 Zm00001d045574_circ_g.3 Zm00001d045574_circ_g.4 Zm00001d045574_circ_g.5 Zm00001d045574_circ_g.6 Zm00001d045574_circ_g.7 Zm00001d045574_circ_g.8 Zm00001d045574_circ_g.10 Zm00001d045574_circ_g.11 Zm00001d045574_circ_g.12 Zm00001d045574_circ_g.13 Zm00001d045574_circ_g.14
Support reads NA
Tissues seedling
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d045574_T016:6
Zm00001d045574_T023:6
Zm00001d045574_T015:1
Zm00001d045574_T013:3
Zm00001d045574_T011:2
Zm00001d045574_T004:1
Zm00001d045574_T010:3
Zm00001d045574_T001:1
Zm00001d045574_T019:7
Zm00001d045574_T012:1
Zm00001d045574_T018:7
Zm00001d045574_T008:1
Zm00001d045574_T020:7
Zm00001d045574_T003:7
Zm00001d045574_T009:3
Zm00001d045574_T002:7
Zm00001d045574_T022:7
Zm00001d045574_T017:7
Zm00001d045574_T007:3
Zm00001d045574_T021:6
Zm00001d045574_T006:3
Zm00001d045574_T005:1
Zm00001d045574_T014:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTGCTATGTTGCCCCTGCTAGGTAAGATTTTGTGATGCCGAGACTGTGAGGAAGGAATACTTC
AAAGAAGAAATCGTGCCTCCTGATTTCCGCGATTAGgaaatgtgcaggtggtctcggaaacatg
acctttaattgattcagaatcgattggcacccaggggggctggcgccttcctataccttttgat
taacttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAATGTGCAGGTGGTCTCGGAAACATGACCTTTAATTGATTCAGAATCGATTGGCACCCAGGG
GGGCTGGCGCCTTCCTATACCTTTTGATTAACTTCTCAAAAGTTGCTCAGACGGCAGCAAACGA
TTGGAGAGTCCAGTAAAAAATGACCCTGTACTTGTATAACTTCTGCGAAGTAGAATGCTGAGTT
TAGGCTGGTGTCTGGAGTGCTCCTGTACCATATTTTTCTGGTTTTGGATGAAGCTATATGGACC
AAATTCATCTCTGTTGAACAATTGCCAATTACATAACTTGTGTTTGCCCAATTCCATGGTGTAG
TACCATAACTTCTCAGTGCAGTGCAGACAACACATGGATTCCATTTTTTGATTAAAGTATCATC
TGCTACAAATATGAATCATGGCTTAGTTTGTAGACTTCATAAAGAAACACACAGATTAATCAAA
CCAGTCTTCGAAGAGTCTCTGTGGATAGGAACGTTCCAAAGCAAAGTAAGATGCAAGTTGTATT
GCATAAAAACCAGGTACACATCAATCAGCTGCATTCTGGAAGACTAAACTGCAACACAACTACA
TCTGCAATCACAGAGAAATCAGGTATACGACCAATTGTTATCTATTGTAAATATTTTGTTTTTT
AGGTCAACAACGGAGAGGGTCAAGCGATCCCCACGTACAGATGCCAGCATGGTCTTTTACATGG
TTCCAAGAGGAGGTAAATCGAGTGTAGCCCTAAAAAGATCTGCCTTGTGCCACTTCAACACTTT
AACCCAGATGCAATAAAAAAACACTTTAACCCAGATGCTGCATTGTGGTGTGGCAAAGGCTTGA
GAATATGACAATAACAGCTGCTCAAAAACTGTTGGTAGGAACATTTATAGCAGCAAAAGAACAA
AATGGAATGTGTGGTTTCTTATCTGCCTTAGATGAGATAAGATTTCGGACATGTGTATTCATGT
TTTCGAGTGATTTGGCACTATGAATGCGCTAGATGGTTGGTTGCTTTTTTTTGTTAATTGCTCA
GGTGATATATGCTGTATTTCTAGTCACTAGTGTTGTATTGTTTGTGCTTGTGCTAAGATGATCT
CTTTTGCACTTGTAACAGGGGCTCATTCAAGTACTCTACTGATCGAAAATGGATGGCGTCTGTG
ATGGTTCATTCTTTTGCACGTCTTCTACACGGGTACATTGACGGTTGATGGAGATGGATGGTGG
TGTAGCTGTTTTGTTTAGCAATTAGCACTCTAGGTGTTGGACCACTGTTTTGTTAATGGATGCT
ATGTAACAGTAGTATGTAACTAATGTGAACTTGTTTAGGTTGCTGTGAAACTGTTATACAACAC
ATTGTTATGGGGTTGTTACACAGCTGATATGTTATGAACATGATATGGAGATATCTTTTCCTTT
TTGGTTTGGGTTTTACTGTTGTGCCATTCGTCTCATAAGTTATGCCATTTTATTATTTACTTTT
GGATTGATATATATTCGTCTCTGAAGCCTTCCTTCACTACAATATGTCTCTGTCATCAACGTAT
CCACTGGCTGAGACACGAAGCCGTGGATAGCTTCCTTTATGGCCGTGTCCACGCTTCCGCATCT
CATATTTTTTCTTATCAAAAGATGCATCGACGTTCACCATCACTTTTCCCTCAGGAGGTTTCTA
TCATCCGTGCTGTATTTTTGTTTCTTTGTTCCTTGTTTGTTGCTAGCTTGGAGTAATTTCTTTG
TAGAGCTGGAGCTCCCCAGCAATGTCCTTAATATTAACGGCCTCTTTAATCTGAAAACGGAAAA
ATAAAGAAGAGAGAAACGGGAGAAGAAGAAAGAAAGGATGGAGAGCAAGTGGGTCCTGTGGCAT
GGAGGAACATGGAGCACAGAAAAGAGTAGTAATATAATGTGATGGAACGGCCGGAATTGAGATG
GTGCTCATAAGATACGGTGTCGTGGAGGGAAACCGTTCCACCCATCTCAATGACACCGTATCTT
ATGAGCAAGGAGCCCTGCTGCTCCCATGAGCAAAATCAATCCAGACCACATCCTCCACATCCAA
CGGTGCTGCGTTAGGGGGGTTTTGTAAAATGTACAGAGTTGCAAAGAACATTTTACAAAACCCC
CTGATATAGCACCGTTGGATGTGGAGGGTGTGGTCTGGATTGATTTTGCTCATGGGAGCACCAA
CGCTCTTTGCGCACAAGATACGTTCTCTCCCTCCACAACCACTTGCTCCTCATCTACTTTTCTC
CTCCGCCTTCCACTCATCCTTGCTCCTGCCTGCCGTCGTGCATCATCATCTCCGGCCAGGGCCA
GGGCATTCGTCTCCGCCTCCGGTCCGGCCTCCTCCACACCGCGCCCCCCCCCCCCCCCAGACGC
GTCGCTGCGTAGCTGCTGGCCGCCATGGCCACCGTCATGGCCGCGGCCGTCTAGTCCTTCCCGT
CCTCCTCGGCCGTCGTCGCCAAGGCGTCGCCGGCGTCCCCCTGTGCCGCCCCGCACTTCCGCCC
GAGGGCCGTGCGGGCCGCTATCCGGGCGCAGGCGTCCGCCGTCGAGGCGCCCGCCACGGCCAAG
GCCAAGAAGGAGTCCAAGAAGCAGGAGGAGGGCGTCGTCACCAACCTATACAAGCCCAAGGAGC
CGTACGTCGGCAGGTGCCTCCTCAACACCAAGATCACCGGCGACGACGCGCCGGGGGAGACGTG
GCACATGGTCTTCAGCACCGAAGGTAGGTACTGAGGTTAAAAAAAAAATCTGATTTTTGCTGCC
TTGTTCGTTCGTTCAATTGCTGTATTCGTATCGTATGTATATACGCTGATGGACGCACGTACGC
AGGCCCTTCTTTGCCTGCGCGAGGTCTCAGAATCCGGGGGGAAAAGAAAAGAAAAGAAAAGATG
ATGACTGTCTCTACCTCTTGCTACATGTGCCGCTCCCTCGTCCGGGCTCCTCCGCTCAAGTCCA
GGAGTGCAGTGCGCTGTCCAAGCGCCGCCCCGCCAGGTGCTAGCGGTGCCACCTCCACCTCCAA
GGTAAACCCACACCTACTACCTGTGTGCTTCGTAAGGTCTATCTACACCTATAGGCTGCAGCCA
CCAGCACAGGAATATGTACTAGCCTGCTCGTTTCAGTTGGAACAGTATTCTCCAGTTTTGGATT
GGAACATGCAGCCACAGCCAAAAGTAGCTGAAGCGATTGGAGTTGTAGCTTTTCGGGGATAATC
AAATGATAGGAGAGTGGAGGTGGTAGATCATGTGTAAGCTTTAGACTACTGACTGATTCACTTG
TCTATCCGGCGCTGGTTGCTTTCCCTGTGTGAAGCTTGTCCTAGAGGTGAAAGAACGGCTAGCA
AGGGAGCACCCAGGCCTCCCCACGGGCAGGAACGGGAGGGACGATGACGACATGGTCCTCTGGT
TCCTAAAGGACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATTGTATC
CTCTAATTCACTCGCTTGTAGCAGTGAAGCTCACACCTAATATATAGCTTCTTTACTGGCTCAC
TAAATTCCTGGTATGGTAACCGAGTTCATATAGCACTGCTATCTTCAGTTTTCCTTTCAACTGC
ATTAGAAATGGCGTCAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAAAGCCTGTA
CCAAACTGGCAAGGCATATGTACATGATTCCTTGGACATTTATGGCCGACCTGTGCTGATTGTA
GTGGCAGCCAAACATTTTCCTTCGGTGCGTTCCGTTTGTTTCCCAATCTTGATTTGGAAATGCT
CAACAGGATAGTGGCTACACACTGTTTCCAGTTTTTTAGAATAGTACACATAACAAAGGCTGAC
AGTATGCAGTGGAAAGTATCAGTACTTCACACCTCATAGCAGCTCTAAAATTAAACTACATGGC
TTGGCTAGCTGACCTGTAACCTATGGATGTCTTAGTATTCAACATGCATTTGTTCTTCATAATA
ATGATGATCCATGTATAATATGCTACTGCAGACACAGGATCCAGTTGGAAACCAGAAGTTGTGT
GCCTATTTGGTTGAGAAGGCAGTCAGCAGACTTCCGCCAGGAGTAGAGAATATACTTGGGATCT
TTGATCTGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTGGTGAGTTT
GGTAGCTTCAAGGCATGACTAAGCATCTCTGATTACCTTTTGTGTTGTTCGGTGGTAGACAGGC
ATATTTTTATTTGTGACGATATGAATGAAACATTGTGTTTATTTGTGACGATATGAATGAAACA
TTGCAAAAGGAGGGCAGTAATGCCACAGTAAAAAAACTGGTAATCATTCATGTAAGGTATACAT
CTGTTGAAAAAGTAATTCCGGCTGAATAAAATAAGAAACTTTTTCCTGGATATGAAAACTCTGT
TGATGCATGCCAATTTAAAAAACAAAGAACGTGCATGTTCATGCTCCCAGAAGTCAGAAGGCGA
AAAAGTTTATCTAATGAATTAATTCAAATCACATACGGATGGAGTTCTAATTCTTGTTCTATGT
TGCAACTAATATACATATAAACATGATTTTTTGGGGTATATGCATCGCAATTAATGTCCCCTCC
CATTCCCAGATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTTGTCG
ATGCTCCTTTTGTTTTTCAACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTC
CCTGGTATGCTCTCCCTCTCTCTTAGGTTAGCGCTTCATCGAACGATATGGATAACCTTACAGT
CTACTGCTATGTTGCCCCTGCTAGGTAAGATTTTGTGATGCCGAGACTGTGAGGAAGGAATACT
TCAAAGAAGAAATCGTGCCTCCTGATTTCCGCGATTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.000900993
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018