Detail information of Zm00001d045574_circ_g.11


General Information
CircRNA Name Zm00001d045574_circ_g.11
ID in PlantcircBase zma_circ_009901
Alias zma_circ_0003188
Organism Zea mays
Position chr9: 27077708-27082638  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d045574
Parent gene annotation Sec14p-like phosphatidylinositol transfer family protein
Parent gene strand +
Alternative splicing Zm00001d045573_circ_ag.1 Zm00001d045573_circ_ag.2 Zm00001d045573_circ_ag.3 Zm00001d045573_circ_ag.4 Zm00001d045573_circ_ag.5 Zm00001d045573_circ_ag.6 Zm00001d045573_circ_ag.7 Zm00001d045573_circ_ag.8 Zm00001d045574_circ_g.1 Zm00001d045574_circ_g.2 Zm00001d045574_circ_g.3 Zm00001d045574_circ_g.4 Zm00001d045574_circ_g.5 Zm00001d045574_circ_g.6 Zm00001d045574_circ_g.7 Zm00001d045574_circ_g.8 Zm00001d045574_circ_g.9 Zm00001d045574_circ_g.10 Zm00001d045574_circ_g.12 Zm00001d045574_circ_g.13 Zm00001d045574_circ_g.14
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d045574_T014:1
Zm00001d045574_T011:2
Zm00001d045574_T017:7
Zm00001d045574_T009:3
Zm00001d045574_T008:1
Zm00001d045574_T007:3
Zm00001d045574_T013:3
Zm00001d045574_T002:7
Zm00001d045574_T021:6
Zm00001d045574_T015:1
Zm00001d045574_T022:7
Zm00001d045574_T020:7
Zm00001d045574_T005:1
Zm00001d045574_T018:7
Zm00001d045574_T003:7
Zm00001d045574_T001:1
Zm00001d045574_T010:3
Zm00001d045574_T016:6
Zm00001d045574_T023:6
Zm00001d045574_T004:1
Zm00001d045574_T012:1
Zm00001d045574_T019:7
Zm00001d045574_T006:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTGATGCCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAAATCGTGCCTCCTGATTTCCGC
GATTAGGTGACATGATTATTTCTTCAGTAATTGCAAaaatgtgcaggtggtctcggaaacatga
cctttaattgattcagaatcgattggcacccaggggggctggcgccttcctataccttttgatt
aacttctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAATGTGCAGGTGGTCTCGGAAACATGACCTTTAATTGATTCAGAATCGATTGGCACCCAGGGG
GGCTGGCGCCTTCCTATACCTTTTGATTAACTTCTCAAAAGTTGCTCAGACGGCAGCAAACGAT
TGGAGAGTCCAGTAAAAAATGACCCTGTACTTGTATAACTTCTGCGAAGTAGAATGCTGAGTTT
AGGCTGGTGTCTGGAGTGCTCCTGTACCATATTTTTCTGGTTTTGGATGAAGCTATATGGACCA
AATTCATCTCTGTTGAACAATTGCCAATTACATAACTTGTGTTTGCCCAATTCCATGGTGTAGT
ACCATAACTTCTCAGTGCAGTGCAGACAACACATGGATTCCATTTTTTGATTAAAGTATCATCT
GCTACAAATATGAATCATGGCTTAGTTTGTAGACTTCATAAAGAAACACACAGATTAATCAAAC
CAGTCTTCGAAGAGTCTCTGTGGATAGGAACGTTCCAAAGCAAAGTAAGATGCAAGTTGTATTG
CATAAAAACCAGGTACACATCAATCAGCTGCATTCTGGAAGACTAAACTGCAACACAACTACAT
CTGCAATCACAGAGAAATCAGGTATACGACCAATTGTTATCTATTGTAAATATTTTGTTTTTTA
GGTCAACAACGGAGAGGGTCAAGCGATCCCCACGTACAGATGCCAGCATGGTCTTTTACATGGT
TCCAAGAGGAGGTAAATCGAGTGTAGCCCTAAAAAGATCTGCCTTGTGCCACTTCAACACTTTA
ACCCAGATGCAATAAAAAAACACTTTAACCCAGATGCTGCATTGTGGTGTGGCAAAGGCTTGAG
AATATGACAATAACAGCTGCTCAAAAACTGTTGGTAGGAACATTTATAGCAGCAAAAGAACAAA
ATGGAATGTGTGGTTTCTTATCTGCCTTAGATGAGATAAGATTTCGGACATGTGTATTCATGTT
TTCGAGTGATTTGGCACTATGAATGCGCTAGATGGTTGGTTGCTTTTTTTTGTTAATTGCTCAG
GTGATATATGCTGTATTTCTAGTCACTAGTGTTGTATTGTTTGTGCTTGTGCTAAGATGATCTC
TTTTGCACTTGTAACAGGGGCTCATTCAAGTACTCTACTGATCGAAAATGGATGGCGTCTGTGA
TGGTTCATTCTTTTGCACGTCTTCTACACGGGTACATTGACGGTTGATGGAGATGGATGGTGGT
GTAGCTGTTTTGTTTAGCAATTAGCACTCTAGGTGTTGGACCACTGTTTTGTTAATGGATGCTA
TGTAACAGTAGTATGTAACTAATGTGAACTTGTTTAGGTTGCTGTGAAACTGTTATACAACACA
TTGTTATGGGGTTGTTACACAGCTGATATGTTATGAACATGATATGGAGATATCTTTTCCTTTT
TGGTTTGGGTTTTACTGTTGTGCCATTCGTCTCATAAGTTATGCCATTTTATTATTTACTTTTG
GATTGATATATATTCGTCTCTGAAGCCTTCCTTCACTACAATATGTCTCTGTCATCAACGTATC
CACTGGCTGAGACACGAAGCCGTGGATAGCTTCCTTTATGGCCGTGTCCACGCTTCCGCATCTC
ATATTTTTTCTTATCAAAAGATGCATCGACGTTCACCATCACTTTTCCCTCAGGAGGTTTCTAT
CATCCGTGCTGTATTTTTGTTTCTTTGTTCCTTGTTTGTTGCTAGCTTGGAGTAATTTCTTTGT
AGAGCTGGAGCTCCCCAGCAATGTCCTTAATATTAACGGCCTCTTTAATCTGAAAACGGAAAAA
TAAAGAAGAGAGAAACGGGAGAAGAAGAAAGAAAGGATGGAGAGCAAGTGGGTCCTGTGGCATG
GAGGAACATGGAGCACAGAAAAGAGTAGTAATATAATGTGATGGAACGGCCGGAATTGAGATGG
TGCTCATAAGATACGGTGTCGTGGAGGGAAACCGTTCCACCCATCTCAATGACACCGTATCTTA
TGAGCAAGGAGCCCTGCTGCTCCCATGAGCAAAATCAATCCAGACCACATCCTCCACATCCAAC
GGTGCTGCGTTAGGGGGGTTTTGTAAAATGTACAGAGTTGCAAAGAACATTTTACAAAACCCCC
TGATATAGCACCGTTGGATGTGGAGGGTGTGGTCTGGATTGATTTTGCTCATGGGAGCACCAAC
GCTCTTTGCGCACAAGATACGTTCTCTCCCTCCACAACCACTTGCTCCTCATCTACTTTTCTCC
TCCGCCTTCCACTCATCCTTGCTCCTGCCTGCCGTCGTGCATCATCATCTCCGGCCAGGGCCAG
GGCATTCGTCTCCGCCTCCGGTCCGGCCTCCTCCACACCGCGCCCCCCCCCCCCCCCAGACGCG
TCGCTGCGTAGCTGCTGGCCGCCATGGCCACCGTCATGGCCGCGGCCGTCTAGTCCTTCCCGTC
CTCCTCGGCCGTCGTCGCCAAGGCGTCGCCGGCGTCCCCCTGTGCCGCCCCGCACTTCCGCCCG
AGGGCCGTGCGGGCCGCTATCCGGGCGCAGGCGTCCGCCGTCGAGGCGCCCGCCACGGCCAAGG
CCAAGAAGGAGTCCAAGAAGCAGGAGGAGGGCGTCGTCACCAACCTATACAAGCCCAAGGAGCC
GTACGTCGGCAGGTGCCTCCTCAACACCAAGATCACCGGCGACGACGCGCCGGGGGAGACGTGG
CACATGGTCTTCAGCACCGAAGGTAGGTACTGAGGTTAAAAAAAAAATCTGATTTTTGCTGCCT
TGTTCGTTCGTTCAATTGCTGTATTCGTATCGTATGTATATACGCTGATGGACGCACGTACGCA
GGCCCTTCTTTGCCTGCGCGAGGTCTCAGAATCCGGGGGGAAAAGAAAAGAAAAGAAAAGATGA
TGACTGTCTCTACCTCTTGCTACATGTGCCGCTCCCTCGTCCGGGCTCCTCCGCTCAAGTCCAG
GAGTGCAGTGCGCTGTCCAAGCGCCGCCCCGCCAGGTGCTAGCGGTGCCACCTCCACCTCCAAG
GTAAACCCACACCTACTACCTGTGTGCTTCGTAAGGTCTATCTACACCTATAGGCTGCAGCCAC
CAGCACAGGAATATGTACTAGCCTGCTCGTTTCAGTTGGAACAGTATTCTCCAGTTTTGGATTG
GAACATGCAGCCACAGCCAAAAGTAGCTGAAGCGATTGGAGTTGTAGCTTTTCGGGGATAATCA
AATGATAGGAGAGTGGAGGTGGTAGATCATGTGTAAGCTTTAGACTACTGACTGATTCACTTGT
CTATCCGGCGCTGGTTGCTTTCCCTGTGTGAAGCTTGTCCTAGAGGTGAAAGAACGGCTAGCAA
GGGAGCACCCAGGCCTCCCCACGGGCAGGAACGGGAGGGACGATGACGACATGGTCCTCTGGTT
CCTAAAGGACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATTGTATCC
TCTAATTCACTCGCTTGTAGCAGTGAAGCTCACACCTAATATATAGCTTCTTTACTGGCTCACT
AAATTCCTGGTATGGTAACCGAGTTCATATAGCACTGCTATCTTCAGTTTTCCTTTCAACTGCA
TTAGAAATGGCGTCAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAAAGCCTGTAC
CAAACTGGCAAGGCATATGTACATGATTCCTTGGACATTTATGGCCGACCTGTGCTGATTGTAG
TGGCAGCCAAACATTTTCCTTCGGTGCGTTCCGTTTGTTTCCCAATCTTGATTTGGAAATGCTC
AACAGGATAGTGGCTACACACTGTTTCCAGTTTTTTAGAATAGTACACATAACAAAGGCTGACA
GTATGCAGTGGAAAGTATCAGTACTTCACACCTCATAGCAGCTCTAAAATTAAACTACATGGCT
TGGCTAGCTGACCTGTAACCTATGGATGTCTTAGTATTCAACATGCATTTGTTCTTCATAATAA
TGATGATCCATGTATAATATGCTACTGCAGACACAGGATCCAGTTGGAAACCAGAAGTTGTGTG
CCTATTTGGTTGAGAAGGCAGTCAGCAGACTTCCGCCAGGAGTAGAGAATATACTTGGGATCTT
TGATCTGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTGGTGAGTTTG
GTAGCTTCAAGGCATGACTAAGCATCTCTGATTACCTTTTGTGTTGTTCGGTGGTAGACAGGCA
TATTTTTATTTGTGACGATATGAATGAAACATTGTGTTTATTTGTGACGATATGAATGAAACAT
TGCAAAAGGAGGGCAGTAATGCCACAGTAAAAAAACTGGTAATCATTCATGTAAGGTATACATC
TGTTGAAAAAGTAATTCCGGCTGAATAAAATAAGAAACTTTTTCCTGGATATGAAAACTCTGTT
GATGCATGCCAATTTAAAAAACAAAGAACGTGCATGTTCATGCTCCCAGAAGTCAGAAGGCGAA
AAAGTTTATCTAATGAATTAATTCAAATCACATACGGATGGAGTTCTAATTCTTGTTCTATGTT
GCAACTAATATACATATAAACATGATTTTTTGGGGTATATGCATCGCAATTAATGTCCCCTCCC
ATTCCCAGATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTTGTCGA
TGCTCCTTTTGTTTTTCAACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCC
CTGGTATGCTCTCCCTCTCTCTTAGGTTAGCGCTTCATCGAACGATATGGATAACCTTACAGTC
TACTGCTATGTTGCCCCTGCTAGGTAAGATTTTGTGATGCCGAGACTGTGAGGAAGGAATACTT
CAAAGAAGAAATCGTGCCTCCTGATTTCCGCGATTAGGTGACATGATTATTTCTTCAGTAATTG
CAA
Conservation Information
Conserved circRNAs NA
PMCS 0.650519135
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b