Detail information of Zm00001d045574_circ_g.7


General Information
CircRNA Name Zm00001d045574_circ_g.7
ID in PlantcircBase zma_circ_009898
Alias zma_circ_0003185
Organism Zea mays
Position chr9: 27077505-27082446  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d045574
Parent gene annotation Sec14p-like phosphatidylinositol transfer family protein
Parent gene strand +
Alternative splicing Zm00001d045573_circ_ag.1 Zm00001d045573_circ_ag.2 Zm00001d045573_circ_ag.3 Zm00001d045573_circ_ag.4 Zm00001d045573_circ_ag.5 Zm00001d045573_circ_ag.6 Zm00001d045573_circ_ag.7 Zm00001d045573_circ_ag.8 Zm00001d045574_circ_g.1 Zm00001d045574_circ_g.2 Zm00001d045574_circ_g.3 Zm00001d045574_circ_g.4 Zm00001d045574_circ_g.5 Zm00001d045574_circ_g.6 Zm00001d045574_circ_g.8 Zm00001d045574_circ_g.9 Zm00001d045574_circ_g.10 Zm00001d045574_circ_g.11 Zm00001d045574_circ_g.12 Zm00001d045574_circ_g.13 Zm00001d045574_circ_g.14
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d045574_T020:6
Zm00001d045574_T011:2
Zm00001d045574_T006:3
Zm00001d045574_T017:6
Zm00001d045574_T018:6
Zm00001d045574_T019:6
Zm00001d045574_T001:2
Zm00001d045574_T013:3
Zm00001d045574_T009:4
Zm00001d045574_T014:2
Zm00001d045574_T023:5
Zm00001d045574_T002:6
Zm00001d045574_T021:5
Zm00001d045574_T015:2
Zm00001d045574_T012:2
Zm00001d045574_T004:1
Zm00001d045574_T016:5
Zm00001d045574_T010:4
Zm00001d045574_T008:2
Zm00001d045574_T022:6
Zm00001d045574_T003:6
Zm00001d045574_T005:2
Zm00001d045574_T007:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCGAAGCGGCTTGGCCAAGTTCTTTTTGTCGATGCTCCTTTTGTTTTTCAACCAATGTGGCAG
GTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTGgtaagattttgtgatgccgagactgtga
ggaaggaatacttcaaagaagaaacggtgcctcctgatttccgcgattaggtgacatgattatt
tcttcagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAAGATTTTGTGATGCCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAAACGGTGCCTCCTG
ATTTCCGCGATTAGGTGACATGATTATTTCTTCAGTAATTGCAAGGCAGTTCTACCTCTGCCTT
TGTGTAACGATTGAAATTCTAAATTGTGCAGATTATTTTTAGTTCTTCCAATCCCTCCTAAAAG
CTATTTTGCAGAAATGTGCAGGTGGTCTCGGAAACATGACCTTTAATTGATTCAGAATCGATTG
GCACCCAGGGGGGCTGGCGCCTTCCTATACCTTTTGATTAACTTCTCAAAAGTTGCTCAGACGG
CAGCAAACGATTGGAGAGTCCAGTAAAAAATGACCCTGTACTTGTATAACTTCTGCGAAGTAGA
ATGCTGAGTTTAGGCTGGTGTCTGGAGTGCTCCTGTACCATATTTTTCTGGTTTTGGATGAAGC
TATATGGACCAAATTCATCTCTGTTGAACAATTGCCAATTACATAACTTGTGTTTGCCCAATTC
CATGGTGTAGTACCATAACTTCTCAGTGCAGTGCAGACAACACATGGATTCCATTTTTTGATTA
AAGTATCATCTGCTACAAATATGAATCATGGCTTAGTTTGTAGACTTCATAAAGAAACACACAG
ATTAATCAAACCAGTCTTCGAAGAGTCTCTGTGGATAGGAACGTTCCAAAGCAAAGTAAGATGC
AAGTTGTATTGCATAAAAACCAGGTACACATCAATCAGCTGCATTCTGGAAGACTAAACTGCAA
CACAACTACATCTGCAATCACAGAGAAATCAGGTATACGACCAATTGTTATCTATTGTAAATAT
TTTGTTTTTTAGGTCAACAACGGAGAGGGTCAAGCGATCCCCACGTACAGATGCCAGCATGGTC
TTTTACATGGTTCCAAGAGGAGGTAAATCGAGTGTAGCCCTAAAAAGATCTGCCTTGTGCCACT
TCAACACTTTAACCCAGATGCAATAAAAAAACACTTTAACCCAGATGCTGCATTGTGGTGTGGC
AAAGGCTTGAGAATATGACAATAACAGCTGCTCAAAAACTGTTGGTAGGAACATTTATAGCAGC
AAAAGAACAAAATGGAATGTGTGGTTTCTTATCTGCCTTAGATGAGATAAGATTTCGGACATGT
GTATTCATGTTTTCGAGTGATTTGGCACTATGAATGCGCTAGATGGTTGGTTGCTTTTTTTTGT
TAATTGCTCAGGTGATATATGCTGTATTTCTAGTCACTAGTGTTGTATTGTTTGTGCTTGTGCT
AAGATGATCTCTTTTGCACTTGTAACAGGGGCTCATTCAAGTACTCTACTGATCGAAAATGGAT
GGCGTCTGTGATGGTTCATTCTTTTGCACGTCTTCTACACGGGTACATTGACGGTTGATGGAGA
TGGATGGTGGTGTAGCTGTTTTGTTTAGCAATTAGCACTCTAGGTGTTGGACCACTGTTTTGTT
AATGGATGCTATGTAACAGTAGTATGTAACTAATGTGAACTTGTTTAGGTTGCTGTGAAACTGT
TATACAACACATTGTTATGGGGTTGTTACACAGCTGATATGTTATGAACATGATATGGAGATAT
CTTTTCCTTTTTGGTTTGGGTTTTACTGTTGTGCCATTCGTCTCATAAGTTATGCCATTTTATT
ATTTACTTTTGGATTGATATATATTCGTCTCTGAAGCCTTCCTTCACTACAATATGTCTCTGTC
ATCAACGTATCCACTGGCTGAGACACGAAGCCGTGGATAGCTTCCTTTATGGCCGTGTCCACGC
TTCCGCATCTCATATTTTTTCTTATCAAAAGATGCATCGACGTTCACCATCACTTTTCCCTCAG
GAGGTTTCTATCATCCGTGCTGTATTTTTGTTTCTTTGTTCCTTGTTTGTTGCTAGCTTGGAGT
AATTTCTTTGTAGAGCTGGAGCTCCCCAGCAATGTCCTTAATATTAACGGCCTCTTTAATCTGA
AAACGGAAAAATAAAGAAGAGAGAAACGGGAGAAGAAGAAAGAAAGGATGGAGAGCAAGTGGGT
CCTGTGGCATGGAGGAACATGGAGCACAGAAAAGAGTAGTAATATAATGTGATGGAACGGCCGG
AATTGAGATGGTGCTCATAAGATACGGTGTCGTGGAGGGAAACCGTTCCACCCATCTCAATGAC
ACCGTATCTTATGAGCAAGGAGCCCTGCTGCTCCCATGAGCAAAATCAATCCAGACCACATCCT
CCACATCCAACGGTGCTGCGTTAGGGGGGTTTTGTAAAATGTACAGAGTTGCAAAGAACATTTT
ACAAAACCCCCTGATATAGCACCGTTGGATGTGGAGGGTGTGGTCTGGATTGATTTTGCTCATG
GGAGCACCAACGCTCTTTGCGCACAAGATACGTTCTCTCCCTCCACAACCACTTGCTCCTCATC
TACTTTTCTCCTCCGCCTTCCACTCATCCTTGCTCCTGCCTGCCGTCGTGCATCATCATCTCCG
GCCAGGGCCAGGGCATTCGTCTCCGCCTCCGGTCCGGCCTCCTCCACACCGCGCCCCCCCCCCC
CCCCAGACGCGTCGCTGCGTAGCTGCTGGCCGCCATGGCCACCGTCATGGCCGCGGCCGTCTAG
TCCTTCCCGTCCTCCTCGGCCGTCGTCGCCAAGGCGTCGCCGGCGTCCCCCTGTGCCGCCCCGC
ACTTCCGCCCGAGGGCCGTGCGGGCCGCTATCCGGGCGCAGGCGTCCGCCGTCGAGGCGCCCGC
CACGGCCAAGGCCAAGAAGGAGTCCAAGAAGCAGGAGGAGGGCGTCGTCACCAACCTATACAAG
CCCAAGGAGCCGTACGTCGGCAGGTGCCTCCTCAACACCAAGATCACCGGCGACGACGCGCCGG
GGGAGACGTGGCACATGGTCTTCAGCACCGAAGGTAGGTACTGAGGTTAAAAAAAAAATCTGAT
TTTTGCTGCCTTGTTCGTTCGTTCAATTGCTGTATTCGTATCGTATGTATATACGCTGATGGAC
GCACGTACGCAGGCCCTTCTTTGCCTGCGCGAGGTCTCAGAATCCGGGGGGAAAAGAAAAGAAA
AGAAAAGATGATGACTGTCTCTACCTCTTGCTACATGTGCCGCTCCCTCGTCCGGGCTCCTCCG
CTCAAGTCCAGGAGTGCAGTGCGCTGTCCAAGCGCCGCCCCGCCAGGTGCTAGCGGTGCCACCT
CCACCTCCAAGGTAAACCCACACCTACTACCTGTGTGCTTCGTAAGGTCTATCTACACCTATAG
GCTGCAGCCACCAGCACAGGAATATGTACTAGCCTGCTCGTTTCAGTTGGAACAGTATTCTCCA
GTTTTGGATTGGAACATGCAGCCACAGCCAAAAGTAGCTGAAGCGATTGGAGTTGTAGCTTTTC
GGGGATAATCAAATGATAGGAGAGTGGAGGTGGTAGATCATGTGTAAGCTTTAGACTACTGACT
GATTCACTTGTCTATCCGGCGCTGGTTGCTTTCCCTGTGTGAAGCTTGTCCTAGAGGTGAAAGA
ACGGCTAGCAAGGGAGCACCCAGGCCTCCCCACGGGCAGGAACGGGAGGGACGATGACGACATG
GTCCTCTGGTTCCTAAAGGACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGG
CGATTGTATCCTCTAATTCACTCGCTTGTAGCAGTGAAGCTCACACCTAATATATAGCTTCTTT
ACTGGCTCACTAAATTCCTGGTATGGTAACCGAGTTCATATAGCACTGCTATCTTCAGTTTTCC
TTTCAACTGCATTAGAAATGGCGTCAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGA
AAAGCCTGTACCAAACTGGCAAGGCATATGTACATGATTCCTTGGACATTTATGGCCGACCTGT
GCTGATTGTAGTGGCAGCCAAACATTTTCCTTCGGTGCGTTCCGTTTGTTTCCCAATCTTGATT
TGGAAATGCTCAACAGGATAGTGGCTACACACTGTTTCCAGTTTTTTAGAATAGTACACATAAC
AAAGGCTGACAGTATGCAGTGGAAAGTATCAGTACTTCACACCTCATAGCAGCTCTAAAATTAA
ACTACATGGCTTGGCTAGCTGACCTGTAACCTATGGATGTCTTAGTATTCAACATGCATTTGTT
CTTCATAATAATGATGATCCATGTATAATATGCTACTGCAGACACAGGATCCAGTTGGAAACCA
GAAGTTGTGTGCCTATTTGGTTGAGAAGGCAGTCAGCAGACTTCCGCCAGGAGTAGAGAATATA
CTTGGGATCTTTGATCTGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTT
TGGTGAGTTTGGTAGCTTCAAGGCATGACTAAGCATCTCTGATTACCTTTTGTGTTGTTCGGTG
GTAGACAGGCATATTTTTATTTGTGACGATATGAATGAAACATTGTGTTTATTTGTGACGATAT
GAATGAAACATTGCAAAAGGAGGGCAGTAATGCCACAGTAAAAAAACTGGTAATCATTCATGTA
AGGTATACATCTGTTGAAAAAGTAATTCCGGCTGAATAAAATAAGAAACTTTTTCCTGGATATG
AAAACTCTGTTGATGCATGCCAATTTAAAAAACAAAGAACGTGCATGTTCATGCTCCCAGAAGT
CAGAAGGCGAAAAAGTTTATCTAATGAATTAATTCAAATCACATACGGATGGAGTTCTAATTCT
TGTTCTATGTTGCAACTAATATACATATAAACATGATTTTTTGGGGTATATGCATCGCAATTAA
TGTCCCCTCCCATTCCCAGATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTT
CTTTTTGTCGATGCTCCTTTTGTTTTTCAACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAAT
CATATGCCTCCCTG
Conservation Information
Conserved circRNAs NA
PMCS 0.818583854
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b