Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d045574_circ_g.7 |
| ID in PlantcircBase | zma_circ_009898 |
| Alias | zma_circ_0003185 |
| Organism | Zea mays |
| Position | chr9: 27077505-27082446 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d045574 |
| Parent gene annotation |
Sec14p-like phosphatidylinositol transfer family protein |
| Parent gene strand | + |
| Alternative splicing | Zm00001d045573_circ_ag.1 Zm00001d045573_circ_ag.2 Zm00001d045573_circ_ag.3 Zm00001d045573_circ_ag.4 Zm00001d045573_circ_ag.5 Zm00001d045573_circ_ag.6 Zm00001d045573_circ_ag.7 Zm00001d045573_circ_ag.8 Zm00001d045574_circ_g.1 Zm00001d045574_circ_g.2 Zm00001d045574_circ_g.3 Zm00001d045574_circ_g.4 Zm00001d045574_circ_g.5 Zm00001d045574_circ_g.6 Zm00001d045574_circ_g.8 Zm00001d045574_circ_g.9 Zm00001d045574_circ_g.10 Zm00001d045574_circ_g.11 Zm00001d045574_circ_g.12 Zm00001d045574_circ_g.13 Zm00001d045574_circ_g.14 |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d045574_T020:6 Zm00001d045574_T011:2 Zm00001d045574_T006:3 Zm00001d045574_T017:6 Zm00001d045574_T018:6 Zm00001d045574_T019:6 Zm00001d045574_T001:2 Zm00001d045574_T013:3 Zm00001d045574_T009:4 Zm00001d045574_T014:2 Zm00001d045574_T023:5 Zm00001d045574_T002:6 Zm00001d045574_T021:5 Zm00001d045574_T015:2 Zm00001d045574_T012:2 Zm00001d045574_T004:1 Zm00001d045574_T016:5 Zm00001d045574_T010:4 Zm00001d045574_T008:2 Zm00001d045574_T022:6 Zm00001d045574_T003:6 Zm00001d045574_T005:2 Zm00001d045574_T007:4 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.818583854 |
| Functional Information | |
|---|---|
| Coding potential | N |
| Potential coding position |
NA |
| Potential amino acid sequence |
NA |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |