Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d045574_circ_g.4 |
ID in PlantcircBase | zma_circ_005841 |
Alias | leafctrl_test_circ_000707 |
Organism | Zea mays |
Position | chr9: 27071614-27081442 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d045574 |
Parent gene annotation |
Sec14p-like phosphatidylinositol transfer family protein |
Parent gene strand | + |
Alternative splicing | Zm00001d045573_circ_ag.1 Zm00001d045573_circ_ag.2 Zm00001d045573_circ_ag.3 Zm00001d045573_circ_ag.4 Zm00001d045573_circ_ag.5 Zm00001d045573_circ_ag.6 Zm00001d045573_circ_ag.7 Zm00001d045573_circ_ag.8 Zm00001d045574_circ_g.1 Zm00001d045574_circ_g.2 Zm00001d045574_circ_g.3 Zm00001d045574_circ_g.5 Zm00001d045574_circ_g.6 Zm00001d045574_circ_g.7 Zm00001d045574_circ_g.8 Zm00001d045574_circ_g.9 Zm00001d045574_circ_g.10 Zm00001d045574_circ_g.11 Zm00001d045574_circ_g.12 Zm00001d045574_circ_g.13 Zm00001d045574_circ_g.14 |
Support reads | NA |
Tissues | leaf |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d045574_T005:4 Zm00001d045574_T012:4 Zm00001d045574_T002:6 Zm00001d045574_T001:4 Zm00001d045574_T022:4 Zm00001d045574_T014:4 Zm00001d045574_T018:4 Zm00001d045574_T011:4 Zm00001d045574_T020:4 Zm00001d045574_T017:4 Zm00001d045574_T003:6 Zm00001d045574_T015:4 Zm00001d045574_T023:3 Zm00001d045574_T007:6 Zm00001d045574_T013:5 Zm00001d045574_T019:4 Zm00001d045574_T021:3 Zm00001d045574_T004:3 Zm00001d045574_T006:5 Zm00001d045574_T010:6 Zm00001d045574_T008:4 Zm00001d045574_T009:6 Zm00001d045574_T016:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.276750162 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Tang et al., 2018 |