Plant Circular RNA Database

Detail information of Os02g0760200_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os02g0760200_circ_g.5
					
						ID in PlantcircBase
						osa_circ_016639
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 32010782-32016042  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0760200						
					
						Parent gene annotation
						
							Conserved hypothetical protein. (Os02t0760200-01);Conserved hypo
thetical protein. (Os02t0760200-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0760200_circ_g.2 Os02g0760200_circ_g.3 Os02g0760200_circ_g.4 Os02g0760200_circ_g.6 Os02g0760200_circ_g.7 Os02g0760200_circ_g.8 Os02g0760200_circ_g.9 Os02g0760200_circ_g.10 Os02g0760200_circ_g.11 Os02g0760200_circ_g.12 Os02g0760200_circ_g.13 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0760200-02:6
Os02t0760200-01:13

General Information
CircRNA Name	Os02g0760200_circ_g.5
ID in PlantcircBase	osa_circ_016639
Alias	NA
Organism	Oryza sativa
Position	chr2: 32010782-32016042 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0760200
Parent gene annotation	Conserved hypothetical protein. (Os02t0760200-01);Conserved hypo thetical protein. (Os02t0760200-02)
Parent gene strand	+
Alternative splicing	Os02g0760200_circ_g.2 Os02g0760200_circ_g.3 Os02g0760200_circ_g.4 Os02g0760200_circ_g.6 Os02g0760200_circ_g.7 Os02g0760200_circ_g.8 Os02g0760200_circ_g.9 Os02g0760200_circ_g.10 Os02g0760200_circ_g.11 Os02g0760200_circ_g.12 Os02g0760200_circ_g.13
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0760200-02:6 Os02t0760200-01:13

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAAGGACCAACTTGTTGAGGCAATAAATCATGTACACAAGGTCACTGAAGTCCATGTGTTTGTA
GCTATATGCCGAGGTTTTTGGGACCGAATGGGACAGagacttactcttgccaattgaggcttaa
aagtacacctgaagatgatgttgtaccgatgcagccaggatctggtgaaacacatgtcttgtat
gtagcaag

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1982
Transcript exons: 32010782-32010869,32010974-32011079,32011234-32011344,32
012027-32012190,32012744-32012864,32013465-32013689,3201
3774-32013964,32014165-32014332,32014418-32014523,320148
08-32014945,32015040-32015204,32015284-32015487,32015848
-32016042
AGACTTACTCTTGCCAATTGAGGCTTAAAAGTACACCTGAAGATGATGTTGTACCGATGCAGCC
AGGATCTGGTGAAACACATGTCTTCTTCCCGGATAGCCTTGGAGATGATTTGATCATTGATGTT
TCTGATTCAAAAGGAAAGCCCTGTGGACGTGTTGTTGCTCAAGTTGCTACAATGGCAGAGGAAT
CTACTGACAAGCTTCGTTGGTGGTCAATATACCGGGAACCTGAGCATGAACTCGTAGGCCGCAT
ACAGCTATACATACACTACACAACTGCTGCAGATGAGAACAACACGAAGTATGGCTCTGTTGCA
GAAACTGTGGCTTATGATATTGTTTTGGAAGTTGCAATGAAAGCACAGCACATTCAACAACGGA
ATCTCATCTTGCATGGTTCCTGGAAATGGTTGTTGACAGAATTTGCATTGTACTATGGCGTTTC
AGATGCCTACACAAAGCTGAGGTATCTCTCTTATATCATGGATGTTGCAACCCCTACTGCTGAT
TGGCTCAATCTGGTTCATGACCTTTTGTTACCCGTACTAATGAAGACCCAAGGCACTGCTGCAT
TGAGCCATCAAGAGAACCGCATATTAGGTGAAGTTGAGGAGCAAATTGAGCAAACTTTAGCGAT
GGTATTTGAGAATTACAAGTCTCTGAATGAATCTTTGCCGTCGGGTTTAGTGGAAGATTTTAGA
CCTCCAACTGGTTTGGCTGCTTGTGCTCTAGAACCAGCTATAAAGCTTTACAGTCTTCTCCATG
ATGTATTATCTCCAGAGGCTCAACTCAGATTATGCGGTTATTTCCAGGCTGCTGCCAGGAAACG
ATCAAGACGATACATGCTTGAGACTGATGAATATGTAGCAGGAAATTCCGAAGGCATAAGAGTG
GATCTGGTGACCTTTACAACAGCTTACCAGAAGATGAAATCATTATGCTGTAATCTACGTAATG
AAATCTTTACAGACATTGAAATTCATAACCAGCACATACTTCCCAGTTTTGTTGACCTCCCCAA
TTTAGCTGCGTCCATCTATAGTGTGGAACTCTCAAATAGACTGCGTGCTTTTCTTGTGGCATGC
CCTCCAACTGGCCCTTCATCACCTGTTGCTGATTTGGTGATTGCAACTGCTGACTTTCAGAAGG
ACCTTGCTAGCTGGAATATATGCCCAATTAAAGCCGGTGTTGACGCAAAAGAGCTATTTCATTT
GTACATTGTCTTATGGATCGAAGACAAGCGCAGGACGTTGCTGGAAAATTGCAGGATGGATAAG
GTTAAATGGTCAGGAGTTAGGACTCAGCATATGACCACACCTTTTGTGGACGAGATGTATGATT
TGCTGAAGAATACATTGACAGAGTACGAGGTTATCATTTGCCGATGGCCAGAATACATATTTGT
TCTTGAGAATGCTATTGCGGATATTGAGAAAGCAGTGATAGAGTCTCTTGAAAAACAGTACGGG
GATGTTTTGGCTCCACTTAAGGATTGTATTGCCCCAAAGAAATTTGGTCTCAAATATGTGCAGA
AACTCACGAAGCGCAATTCAGTTGGCCCCTATACTGTACCTGAAGATCTGGGCATTCTCCTGAA
TACAATGAAAAGACTATTAGATGTTTTGCGGCCAAGGATTGAGAGTCATCTGAAGTCATGGAGT
TCTTGTATGCCTAATGGAGGAAACTCTGCAGCTATTGGGGAGAGACTTAGTGAAGTTACGGTAA
CACTGAGGGCCAAATTCCGAAACTACATGCAAGCTGTTGTGGAGAAGCTCTCAGAAAATACTCG
CATGCAAAATACTACAAAGCTCAAGAAGATCATTCAGGATTCAAAAGAATTGGTGATGGAGTCA
GATATTCGAAGCAGGATGCAAGCGTTGAAGGACCAACTTGTTGAGGCAATAAATCATGTACACA
AGGTCACTGAAGTCCATGTGTTTGTAGCTATATGCCGAGGTTTTTGGGACCGAATGGGACAG
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	GAAGGACCAACTTGTTGAGGCAATAAATCATGTACACAAGGTCACTGAAGTCCATGTGTTTGTA GCTATATGCCGAGGTTTTTGGGACCGAATGGGACAGagacttactcttgccaattgaggcttaa aagtacacctgaagatgatgttgtaccgatgcagccaggatctggtgaaacacatgtcttgtat gtagcaag
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1982 Transcript exons: 32010782-32010869,32010974-32011079,32011234-32011344,32 012027-32012190,32012744-32012864,32013465-32013689,3201 3774-32013964,32014165-32014332,32014418-32014523,320148 08-32014945,32015040-32015204,32015284-32015487,32015848 -32016042 AGACTTACTCTTGCCAATTGAGGCTTAAAAGTACACCTGAAGATGATGTTGTACCGATGCAGCC AGGATCTGGTGAAACACATGTCTTCTTCCCGGATAGCCTTGGAGATGATTTGATCATTGATGTT TCTGATTCAAAAGGAAAGCCCTGTGGACGTGTTGTTGCTCAAGTTGCTACAATGGCAGAGGAAT CTACTGACAAGCTTCGTTGGTGGTCAATATACCGGGAACCTGAGCATGAACTCGTAGGCCGCAT ACAGCTATACATACACTACACAACTGCTGCAGATGAGAACAACACGAAGTATGGCTCTGTTGCA GAAACTGTGGCTTATGATATTGTTTTGGAAGTTGCAATGAAAGCACAGCACATTCAACAACGGA ATCTCATCTTGCATGGTTCCTGGAAATGGTTGTTGACAGAATTTGCATTGTACTATGGCGTTTC AGATGCCTACACAAAGCTGAGGTATCTCTCTTATATCATGGATGTTGCAACCCCTACTGCTGAT TGGCTCAATCTGGTTCATGACCTTTTGTTACCCGTACTAATGAAGACCCAAGGCACTGCTGCAT TGAGCCATCAAGAGAACCGCATATTAGGTGAAGTTGAGGAGCAAATTGAGCAAACTTTAGCGAT GGTATTTGAGAATTACAAGTCTCTGAATGAATCTTTGCCGTCGGGTTTAGTGGAAGATTTTAGA CCTCCAACTGGTTTGGCTGCTTGTGCTCTAGAACCAGCTATAAAGCTTTACAGTCTTCTCCATG ATGTATTATCTCCAGAGGCTCAACTCAGATTATGCGGTTATTTCCAGGCTGCTGCCAGGAAACG ATCAAGACGATACATGCTTGAGACTGATGAATATGTAGCAGGAAATTCCGAAGGCATAAGAGTG GATCTGGTGACCTTTACAACAGCTTACCAGAAGATGAAATCATTATGCTGTAATCTACGTAATG AAATCTTTACAGACATTGAAATTCATAACCAGCACATACTTCCCAGTTTTGTTGACCTCCCCAA TTTAGCTGCGTCCATCTATAGTGTGGAACTCTCAAATAGACTGCGTGCTTTTCTTGTGGCATGC CCTCCAACTGGCCCTTCATCACCTGTTGCTGATTTGGTGATTGCAACTGCTGACTTTCAGAAGG ACCTTGCTAGCTGGAATATATGCCCAATTAAAGCCGGTGTTGACGCAAAAGAGCTATTTCATTT GTACATTGTCTTATGGATCGAAGACAAGCGCAGGACGTTGCTGGAAAATTGCAGGATGGATAAG GTTAAATGGTCAGGAGTTAGGACTCAGCATATGACCACACCTTTTGTGGACGAGATGTATGATT TGCTGAAGAATACATTGACAGAGTACGAGGTTATCATTTGCCGATGGCCAGAATACATATTTGT TCTTGAGAATGCTATTGCGGATATTGAGAAAGCAGTGATAGAGTCTCTTGAAAAACAGTACGGG GATGTTTTGGCTCCACTTAAGGATTGTATTGCCCCAAAGAAATTTGGTCTCAAATATGTGCAGA AACTCACGAAGCGCAATTCAGTTGGCCCCTATACTGTACCTGAAGATCTGGGCATTCTCCTGAA TACAATGAAAAGACTATTAGATGTTTTGCGGCCAAGGATTGAGAGTCATCTGAAGTCATGGAGT TCTTGTATGCCTAATGGAGGAAACTCTGCAGCTATTGGGGAGAGACTTAGTGAAGTTACGGTAA CACTGAGGGCCAAATTCCGAAACTACATGCAAGCTGTTGTGGAGAAGCTCTCAGAAAATACTCG CATGCAAAATACTACAAAGCTCAAGAAGATCATTCAGGATTCAAAAGAATTGGTGATGGAGTCA GATATTCGAAGCAGGATGCAAGCGTTGAAGGACCAACTTGTTGAGGCAATAAATCATGTACACA AGGTCACTGAAGTCCATGTGTTTGTAGCTATATGCCGAGGTTTTTGGGACCGAATGGGACAG
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.213186509

Conservation Information
Conserved circRNAs	NA
PMCS	0.213186509

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							32016013-32010799(+)
32010839-32010799(+)
32010866-32015972(-)
						
					

						Potential amino acid sequence
						
							MPRFLGPNGTETYSCQLRLKSTPEDDVVPMQPGSGETHVFFPDSLGDDLIIDVSDSKGKPCGRV
VAQVATMAEESTDKLRWWSIYREPEHELVGRIQLYIHYTTAADENNTKYGSVAETVAYDIVLEV
AMKAQHIQQRNLILHGSWKWLLTEFALYYGVSDAYTKLRYLSYIMDVATPTADWLNLVHDLLLP
VLMKTQGTAALSHQENRILGEVEEQIEQTLAMVFENYKSLNESLPSGLVEDFRPPTGLAACALE
PAIKLYSLLHDVLSPEAQLRLCGYFQAAARKRSRRYMLETDEYVAGNSEGIRVDLVTFTTAYQK
MKSLCCNLRNEIFTDIEIHNQHILPSFVDLPNLAASIYSVELSNRLRAFLVACPPTGPSSPVAD
LVIATADFQKDLASWNICPIKAGVDAKELFHLYIVLWIEDKRRTLLENCRMDKVKWSGVRTQHM
TTPFVDEMYDLLKNTLTEYEVIICRWPEYIFVLENAIADIEKAVIESLEKQYGDVLAPLKDCIA
PKKFGLKYVQKLTKRNSVGPYTVPEDLGILLNTMKRLLDVLRPRIESHLKSWSSCMPNGGNSAA
IGERLSEVTVTLRAKFRNYMQAVVEKLSENTRMQNTTKLKKIIQDSKELVMESDIRSRMQALKD
QLVEAINHVHKVTEVHVFVAICRGFWDRMGQRLTLAN*(+)
MQPGSGETHVFFPDSLGDDLIIDVSDSKGKPCGRVVAQVATMAEESTDKLRWWSIYREPEHELV
GRIQLYIHYTTAADENNTKYGSVAETVAYDIVLEVAMKAQHIQQRNLILHGSWKWLLTEFALYY
GVSDAYTKLRYLSYIMDVATPTADWLNLVHDLLLPVLMKTQGTAALSHQENRILGEVEEQIEQT
LAMVFENYKSLNESLPSGLVEDFRPPTGLAACALEPAIKLYSLLHDVLSPEAQLRLCGYFQAAA
RKRSRRYMLETDEYVAGNSEGIRVDLVTFTTAYQKMKSLCCNLRNEIFTDIEIHNQHILPSFVD
LPNLAASIYSVELSNRLRAFLVACPPTGPSSPVADLVIATADFQKDLASWNICPIKAGVDAKEL
FHLYIVLWIEDKRRTLLENCRMDKVKWSGVRTQHMTTPFVDEMYDLLKNTLTEYEVIICRWPEY
IFVLENAIADIEKAVIESLEKQYGDVLAPLKDCIAPKKFGLKYVQKLTKRNSVGPYTVPEDLGI
LLNTMKRLLDVLRPRIESHLKSWSSCMPNGGNSAAIGERLSEVTVTLRAKFRNYMQAVVEKLSE
NTRMQNTTKLKKIIQDSKELVMESDIRSRMQALKDQLVEAINHVHKVTEVHVFVAICRGFWDRM
GQRLTLAN*(+)
MCFTRSWLHRYNIIFRCTFKPQLARVSLCPIRSQKPRHIATNTWTSVTLCT*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	32016013-32010799(+) 32010839-32010799(+) 32010866-32015972(-)
Potential amino acid sequence	MPRFLGPNGTETYSCQLRLKSTPEDDVVPMQPGSGETHVFFPDSLGDDLIIDVSDSKGKPCGRV VAQVATMAEESTDKLRWWSIYREPEHELVGRIQLYIHYTTAADENNTKYGSVAETVAYDIVLEV AMKAQHIQQRNLILHGSWKWLLTEFALYYGVSDAYTKLRYLSYIMDVATPTADWLNLVHDLLLP VLMKTQGTAALSHQENRILGEVEEQIEQTLAMVFENYKSLNESLPSGLVEDFRPPTGLAACALE PAIKLYSLLHDVLSPEAQLRLCGYFQAAARKRSRRYMLETDEYVAGNSEGIRVDLVTFTTAYQK MKSLCCNLRNEIFTDIEIHNQHILPSFVDLPNLAASIYSVELSNRLRAFLVACPPTGPSSPVAD LVIATADFQKDLASWNICPIKAGVDAKELFHLYIVLWIEDKRRTLLENCRMDKVKWSGVRTQHM TTPFVDEMYDLLKNTLTEYEVIICRWPEYIFVLENAIADIEKAVIESLEKQYGDVLAPLKDCIA PKKFGLKYVQKLTKRNSVGPYTVPEDLGILLNTMKRLLDVLRPRIESHLKSWSSCMPNGGNSAA IGERLSEVTVTLRAKFRNYMQAVVEKLSENTRMQNTTKLKKIIQDSKELVMESDIRSRMQALKD QLVEAINHVHKVTEVHVFVAICRGFWDRMGQRLTLAN(+) MQPGSGETHVFFPDSLGDDLIIDVSDSKGKPCGRVVAQVATMAEESTDKLRWWSIYREPEHELV GRIQLYIHYTTAADENNTKYGSVAETVAYDIVLEVAMKAQHIQQRNLILHGSWKWLLTEFALYY GVSDAYTKLRYLSYIMDVATPTADWLNLVHDLLLPVLMKTQGTAALSHQENRILGEVEEQIEQT LAMVFENYKSLNESLPSGLVEDFRPPTGLAACALEPAIKLYSLLHDVLSPEAQLRLCGYFQAAA RKRSRRYMLETDEYVAGNSEGIRVDLVTFTTAYQKMKSLCCNLRNEIFTDIEIHNQHILPSFVD LPNLAASIYSVELSNRLRAFLVACPPTGPSSPVADLVIATADFQKDLASWNICPIKAGVDAKEL FHLYIVLWIEDKRRTLLENCRMDKVKWSGVRTQHMTTPFVDEMYDLLKNTLTEYEVIICRWPEY IFVLENAIADIEKAVIESLEKQYGDVLAPLKDCIAPKKFGLKYVQKLTKRNSVGPYTVPEDLGI LLNTMKRLLDVLRPRIESHLKSWSSCMPNGGNSAAIGERLSEVTVTLRAKFRNYMQAVVEKLSE NTRMQNTTKLKKIIQDSKELVMESDIRSRMQALKDQLVEAINHVHKVTEVHVFVAICRGFWDRM GQRLTLAN(+) MCFTRSWLHRYNIIFRCTFKPQLARVSLCPIRSQKPRHIATNTWTSVTLCT*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0760200_circ_g.5

Address

Any questions?

Supported by