Detail information of 5_circ_ag.4


General Information
CircRNA Name 5_circ_ag.4
ID in PlantcircBase ath_circ_037840
Alias NA
Organism Arabidpsis thaliana
Position chr5: 4094567-4099195  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.2 5_circ_ag.3 AT5G12950_circ_g.1 5_circ_ag.2 AT5G12950_circ_g.3 AT5G12950_circ_g.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10
Support reads 36
Tissues root, aerial, inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATATCATAGTGTTTTGGACTCTGCAGAGAGATTCCAAGTATTTGTTTCTCGCACATCTCTTT
GACAAGCCTTGCTTTCTCGGAGTCCTCGCAATTCAGgccgatgatattagtggattccacgcta
atacacatattcccatcgtcgttggatcccaacaacggtatgaaatcactggtgatctactcca
taaggtat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCGATGATATTAGTGGATTCCACGCTAATACACATATTCCCATCGTCGTTGGATCCCAACAAC
GGTATGAAATCACTGGTGATCTACTCCATAAGGTATCGAAGAGTAACCAAGAAAAGTATGACAT
TTTTATCAAAGAAGATATTGGTTCTCTTGATTCTGAAATCTGCATTTCCAGGAAATCTCGATGT
TCTTTATGGACATTTTTAATGCTTCTCACAGCTATGCAACAGGAGGAACATCAGTCAGTGAGTT
CTGGTACTACCATTACCTGACTTTAGTCTTTGGTTCATTGTAACATGACTTTTTGTTTTAAGTT
CTAACCATGATTTGGGAATGGTAATATTAGGCAAGATCCCAAGAGAATGGCGACTGCACTGCAA
ACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAGGTAGGATTTTAAACTTTTCCCC
CTCTTTCTATTTGCTCAAGGTAACATACTAACATATCAACACTTGTACAATTTCAGGTCTCTAG
GAATCTGTTCAGATGGACAAAAGAGGTTAGCTATGCAGACTATTACGAGCGCGCCTTGACCAAC
GGCGTGTTGGGAATTCAAAGAGGAACCCAGCCTGGACTGATGATCTACATGCTCCCATTAGGTA
AAGGTGTTTCTAAGGCTGTGACTTATCACGGTTGGGGAACACCTTATGATTCCTTCTGGTGTTG
CTATGGCACTGGTAAACTCTTAACCACAATTCATCTGGTTTTCTACATTTTTGTAAGATACAAA
AGTAAGATAAATTTTGAGGGTCTTTTTTTGTTTCTGTCCACAGGAATTGAATCCTTCTCAAAAC
TGGGAGATTCCATATATTTTCAAGAAGATGGTGCAACTCCAGCTCTTTATGTCACCCAATATAT
ATCAAGCTCACTTGATTGGAAATCTGCTGGTCTTTCAATATCTCAGAAAGTTAATCCTGTTGTG
TCGTGGGATCCGTACATGCGTGTGACATTCACTCTTTCTTCTTCCAAAGTGGTAAAACTTTTGC
ACAACTTGATGCAACATGTTACATTGAAGAAAGAGTCTGATGGATCCAATTTTGTTGCAGGGAG
TGGCGAAGGAGTCGACTTTGAATCTAAGAATTCCTGTTTGGACTAACTCTATAGGTGCCAAAGT
ATCTTTGAATGGGCGACCCTTAAACGTACCAACTTCAGGTGATTTGAGCATTAGGTTCTAAAAA
GCAGAACTCGCTTGACTGTTACAGTCTCTAGTTTGTGAAATGAGAATCATATTGTACCTGTCTT
TTTCTTTGCAGGTAATTTCCTATCAATCAAACAGAAATGGAAATCTGGTGATCAAGTAACCATG
GAGCTACCAATGAGTATCAGAACCGAAGCTATAAAAGGTATAAACACACAGTTTTGCTTTTGTA
GACTGGTACCCTTACTCCGGCAATCTATAACTAGCAGTATATGTATAAATTGTATGCAACTCTG
TTTTGACATTATTTTGTGAGTATTTCAGATGATCGGCCAGAGTACGCATCTCTTCAAGCCATAC
TCTATGGCCCCTACTTGTTAGCCGGACACACGAGCAGGGACTGGAGCATCACAACTCAGGCTAA
ACCTGGAAAATGGATAACCCCTATACCTGAAACTCAAAACAGTTACCTTGTCACACTCTCACAA
CAATCTGGAAACGTATCTTACGTGTTTTCAAATAGCAACCAAACCATCACAATGAGAGTATCAC
CCGAGCCAGGGACACAAGATGCCGTTGCAGCGACTTTCAGGCTCGTGACTGATAATTCTAAACC
ACGGATTTCGGGTCCAGAAGGACTAATTGGAAGGCTGGTCATGCTTGAGCCGTTTGATTTCCCT
GGCATGATTGTAAAGCAAGCAACTGATAGCTCCCTCACAGTTCAAGCTTCTTCTCCTAGTGACA
AAGGAGCTTCTAGCTTTCGGTTAGTATCTGGACTTGACGGGAAGCTAGGAAGCGTTTCGTTAAG
ACTAGAGAGCAAAAAAGGTTGTTTTGTGTACAGCGATCAAACCCTAAAGCAAGGGACAAAACTA
AGGCTAGAATGTGGTTCGGATGCGACTGATGAGAAGTTTAAAGAGGCAGCAAGCTTTAGTTTAA
AGACAGGAATGCATCAATACAATCCAATGAGTTTCGTGATGAGCGGAACACAGAGGAACTTTGT
GTTATCGCCATTGTTTAGCTTAAGAGATGAAACATACAATGTGTACTTCAGTGTGCAAACTTGA
AGAAAGAAACCCTTATTGGGTGAAAATATAAGAAAGAAAAGTCTCATTTGAAATATAGACATGT
GTTTAGATGTTTAGCCTCTTAGGTTTGTTTGTGATTTTGTGTTCTGCAATGTCATCTAAAAATG
TATGTTGCTGTTACAATAAATATAAACAAATGTGTTTTTATAAATTGTGCTAACGATGAATCCA
TGTCTTTCTTTATATTCTAAATATAGAGTGGAGAATAGTGTGTTGCCTTGAGCTTTCATGAAAT
AATATTCTCATATGTGATCTGTTGCAGAAATTAGAATACCATAGTTATTGTATCAAAATATCCA
ACACATGAAAAGTAAAATATCCAACAAAATCACACGCATAAACATTACTTACGAATACGATAGT
TATTGTGTTTATGCGTGTGATTTTCACTTTGGTGGAGATAACTTCTATAGAAGAGGGGAGAATA
TTATACAGTATTTTGGAAATATGTTATAATTTTGGAGAAATCACAAATCAAAGTTTATAATTAC
ATTCAGGGAGATTTTACAAGATTATAGAAAAACTTTATAAGATTTTGGAAAAACTAATCATAGA
AATTATACAAAATTCTCTAGTAATCATTTAAAATCTTTGACATATCTACTTTCTATATTTTTTA
AAAGTCATTAAAATTCTTTCAAAATCACAAACCAATAACACCCCCTTAATCTTTTTTTACAACA
AATCCTCCTCTGTTTTTATCCAAATCCTCTCTGTTTTTATCCAAATCCTCCTCTGTTTTTCTCT
TTCACTTGATTGAATTCTTTTTTTAGCAGACATTGCTTCAATCGTTAGAAAATCTATTTTTGGC
ACACATTTTCTTTAGAAATCTTTTGCTTTATAAACATCTCTTCTCATTATTTTCTTCTTCCATT
TCAAATCCCCTCTCCCTAACAGTTTTGAGTCTCTTGGATTCTGAACGTGGGATCTGGGGATTTG
AATAGTTACACTTTTTTGTTTATGAAAAAACATACGATGAAGTCTGGTGTGATCATAACCATTG
CTCTGTTATTATACACAAGCTTTCTTCTTGTTTGTCTGGCGAAAGAGTGTACAGACATTCCTAC
GAAGCTCTCATCGCATACTCTCCGCAGCGAGCTTCTGCAATCACAGAACGCAAATTTGAAGTCA
GAGGAGTTCTCTCATTACCATTTAACTCCAACTGATGACTCTGCTTGGTCTACTTTGTTGCCAA
GGAAGATGTTGAAAGAAGAGACTGATGATTTTGCTTGGACTATGTTGTATAGAAAGTTCAAGGA
CTCTAATTCCTCTGGTAACTTTCTCAAGGATGTCTCTTTGCACGACGTTAGGCTGGACCCGAGC
TCTTTCCATTGGAGGGCTCAGCAGACAAACCTTGAGTATCTATTGATGTTGGATGTTGATGGTT
TGGCCTATAACTTCCGTAAAGAAGCTGGTCTTAATGCTCCTGGAGTTCCCTATGGAGGATGGGA
GAAACCAGATAGTGAACTCCGTGGCCATTTTGTCGGTATAAACCTCTGCCTTTTTCCCCAATTC
AATACACTTTCTTGATTCATGCTGTTGATAGTATGCAGGAAAAGGTTTTGAGATTTGATGTTTG
GTATAGATTGCATAGGCCCTTATAGGAATCACCTTTTGACATTTCATAGACACTTGAAAGGATT
TTAACTCTTACATTGCATAGAACCTTAAAGGAATGACCTTTTAGTTGATGGCTCAAAAATCTGT
CTGTTTGTTTTGAAGGTCACTATTTGAGTGCAACAGCTTATATGTGGGCAAGTACTCATAACGA
AACTCTCAAGGCGAAAATGACAGCTCTTGTCTCAGCTCTAGCGGAATGCCAGCAGAAATATGGC
ACAGGATATCTCTCAGCTTTCCCTTCCAGTTTTTTCGACCGGTTTGAAGCTATAACACATGTTT
GGGCTCCTTACTATACCATTCACAAGGTGAATAGTCAGACCCTTTGACTGAGTTGAAGATTGAT
ATGCTTATGTTTTGCAAGAGAGTAACATCTCTGTCTTAATTTTGACAGATTTTGGCCGGCCTGG
TGGATCAATACAAGTTGGCTGGGAATACTCAAGCTTTAAAGATGGCAACAGGGATGGCTGATTA
CTTTTATGGCCGTGTTCAAAATGTGATAAAGAAGTACAGTGTTGAACGACATTGGCTATCACTA
AACGAAGAGACTGGTGGCATGAATGATGTTCTTTATCAGCTATACAGCATCACTGTGAGTTAAA
ATCTTATCAGACTCTAAACTCCAACCTTAGATTTCTATCTAGCTTTGTGTTATATCATAGTGTT
TTGGACTCTGCAGAGAGATTCCAAGTATTTGTTTCTCGCACATCTCTTTGACAAGCCTTGCTTT
CTCGGAGTCCTCGCAATTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.66291453
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017