Statistics

Statistics data of PlantcircBase v7.0


  1. Identification methods
  2. Number of tools
  3. circRNA types
  4. circRNA length distribution
  5. splicing signals
Oryza sativa

Oryza sativa

Identified circRNAs (circRNA transcripts): 43883
circRNA loci: 22527
Created with Highcharts 6.1.0Different types of circRNA identification toolsNumber of identified circRNAsNumber of circRNAs identified by different bioinformatic tools in Oryza sativa23 12323 1231 3441 3442 8062 80672772712 48212 4823763761 7251 7252 3542 3542 3542 3543 6433 6432525CIRCexplorercircRNA_findercircseq_cupCIRIfind_circKNIFEPcircRNA_finderSMALTSegemehlCIRI-longNA05k10k15k20k25k
Created with Highcharts 6.1.0Number of softwaresNumber of identified circRNAsNumber of circRNAs identified by multiple softwares in Oryza sativa38 78938 7894 0524 05257657623723711011011911912345>5010k20k30k40k50k
Created with Highcharts 6.1.0circRNA typesNumber of identified circRNAsDifferent types of circRNAs in Oryza sativa17 08117 0811 1961 1963 3833 3833 7213 72177277252552510 53010 5301 4211 4213 6673 6671 5871 587e-circRNAei-circRNAu-circRNAue-circRNAui-circRNAie-circRNAi-circRNAag-circRNAig-circRNAigg-circRNA05k10k15k20k
Created with Highcharts 6.1.0circRNA length (bp)Number of identified circRNAsDistribution of circRNA length in Oryza sativa1 8171 81727 23927 2395 5325 5322 8292 8291 6331 6334 8334 833<=100101-500501-10001001-15001501-2000>200005k10k15k20k25k30k
Created with Highcharts 6.1.0splicing signal typesNumber of identified circRNAsDistribution of circRNA splicing signals in Oryza sativa13 66813 66813 68713 68716 52816 528GT-AGCT-ACother05k10k15k20k
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Address

Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.

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Please contact Fan's lab, qinjiechu@zju.edu.cn

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Copyright©2017-2022 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Last modified at 2022-05-16