Plant Circular RNA Database

Detail information of Os01g0575500_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os01g0575500_circ_g.7
					
						ID in PlantcircBase
						osa_circ_002312
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 22172341-22177611  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os01g0575500						
					
						Parent gene annotation
						
							Similar to predicted protein. (Os01t0575500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os01g0575500_circ_g.1 Os01g0575500_circ_g.2 Os01g0575500_circ_g.3 Os01g0575500_circ_g.4 Os01g0575500_circ_g.5 Os01g0575500_circ_g.6 Os01g0575500_circ_g.8 Os01g0575500_circ_g.9 Os01g0575500_circ_g.10 Os01g0575500_circ_g.11 Os01g0575500_circ_g.12 Os01g0575500_circ_g.13 Os01g0575500_circ_g.14 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0575500-01:11

General Information
CircRNA Name	Os01g0575500_circ_g.7
ID in PlantcircBase	osa_circ_002312
Alias	NA
Organism	Oryza sativa
Position	chr1: 22172341-22177611 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os01g0575500
Parent gene annotation	Similar to predicted protein. (Os01t0575500-01)
Parent gene strand	-
Alternative splicing	Os01g0575500_circ_g.1 Os01g0575500_circ_g.2 Os01g0575500_circ_g.3 Os01g0575500_circ_g.4 Os01g0575500_circ_g.5 Os01g0575500_circ_g.6 Os01g0575500_circ_g.8 Os01g0575500_circ_g.9 Os01g0575500_circ_g.10 Os01g0575500_circ_g.11 Os01g0575500_circ_g.12 Os01g0575500_circ_g.13 Os01g0575500_circ_g.14
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0575500-01:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							CTGTGGATGTGTCAACACCTGAATGAAGTCCCATCATGTAGGGTGTTGGAGCATCTATGTAATC
AACCCCACTAGAGAAAATTATTGGGATGTAGACATGcagttcttttacagcaataaactgttca
tcagttaatcggcattgccaaccctaaaaggtagagaagttagttggatataatgtggatcaga
aaatgcca

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 1107
Transcript exons: 22172341-22172391,22172475-22172548,22172650-22172725,22
173575-22173619,22173723-22173789,22173868-22173985,2217
4470-22174665,22175441-22175530,22175875-22175929,221766
45-22176865,22177498-22177611
CAGTTCTTTTACAGCAATAAACTGTTCATCAGTTAATCGGCATTGCCAACCCGAATGAATATGC
TCTCTGATGCACTCAACAAAGCCACTACCCCCAATGCCTTCTGCGTCAGACTCAATCAAAGCAA
GAATGGTGCCATATTCAAATGATGAAAGGGGATCCTCAGTTGCTCCAAGTCTCAGAAGACGAAG
CCACAGTCCCTGAAGCTTTACTTTTATATCTAGAACCATCCTTTCTCTTTCTGCCGCCCTCTCT
CTAGGACTCAAACTTTCTACCTTTGGACCACCTCCAATAGTTGGAATTGAGGGAGAGTTTGGTA
CTTGCTTACTAGCCCCACTAGCTACTGCTAGAATTGATTTGCGTTTTTCTTCTTGTTCTTCTGT
CCTTGCGTTTGTTGGAAACCTTTTATAGCAGAATCGTTTACCTGGTTCTGAACCTCCAGTCTCA
GAATCAGCTATTGTTATGATCTCAGGATCAGCAACATGAGAAGGAAATATTGCCAGAGGGTTTT
GTCCTCTCCCAGTTGCATCCTGCAACTTATCAAGAAGGTTATTGGTGTTTTCTTCTGCATTGTT
GCATCTTTCCAGATAATCCAAGAATCCTTGTGTCTCTATAAACTGCATAATCATTGACATTGAC
TCAACAGGCTGATTAGTTGCACGTGAACGCTTTTTAAGAAATGCTTGAGTATTGAAACCACTTG
GTGAAGCATTATCAATGAAGTTACGGTAACCGCTCATAATCAAGGCAAAGAATCTTAAGAAAAT
CAACCTAAGCTGAAAATCATGTTCCTGCCCCCATGATTTTGTGCCAGTCCGGAGAGAATGGTCA
CCCATACTGCCAAGGTTGATTTTCATGTAATCAATACCCATTACATTGGGCTGTAGTAGTTTTA
ATATCTCACCACGCAAGAAATTATGTTCAGTCTCTGGTATTGGAGGGATTTCTTCTGAGGTTGT
AATCCGATTGTATTCGAGGTCTACCACCACAACACCATCCATTGTCACTGTGGATGTGTCAACA
CCTGAATGAAGTCCCATCATGTAGGGTGTTGGAGCATCTATGTAATCAACCCCACTAGAGAAAA
TTATTGGGATGTAGACATG
						
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	CTGTGGATGTGTCAACACCTGAATGAAGTCCCATCATGTAGGGTGTTGGAGCATCTATGTAATC AACCCCACTAGAGAAAATTATTGGGATGTAGACATGcagttcttttacagcaataaactgttca tcagttaatcggcattgccaaccctaaaaggtagagaagttagttggatataatgtggatcaga aaatgcca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1107 Transcript exons: 22172341-22172391,22172475-22172548,22172650-22172725,22 173575-22173619,22173723-22173789,22173868-22173985,2217 4470-22174665,22175441-22175530,22175875-22175929,221766 45-22176865,22177498-22177611 CAGTTCTTTTACAGCAATAAACTGTTCATCAGTTAATCGGCATTGCCAACCCGAATGAATATGC TCTCTGATGCACTCAACAAAGCCACTACCCCCAATGCCTTCTGCGTCAGACTCAATCAAAGCAA GAATGGTGCCATATTCAAATGATGAAAGGGGATCCTCAGTTGCTCCAAGTCTCAGAAGACGAAG CCACAGTCCCTGAAGCTTTACTTTTATATCTAGAACCATCCTTTCTCTTTCTGCCGCCCTCTCT CTAGGACTCAAACTTTCTACCTTTGGACCACCTCCAATAGTTGGAATTGAGGGAGAGTTTGGTA CTTGCTTACTAGCCCCACTAGCTACTGCTAGAATTGATTTGCGTTTTTCTTCTTGTTCTTCTGT CCTTGCGTTTGTTGGAAACCTTTTATAGCAGAATCGTTTACCTGGTTCTGAACCTCCAGTCTCA GAATCAGCTATTGTTATGATCTCAGGATCAGCAACATGAGAAGGAAATATTGCCAGAGGGTTTT GTCCTCTCCCAGTTGCATCCTGCAACTTATCAAGAAGGTTATTGGTGTTTTCTTCTGCATTGTT GCATCTTTCCAGATAATCCAAGAATCCTTGTGTCTCTATAAACTGCATAATCATTGACATTGAC TCAACAGGCTGATTAGTTGCACGTGAACGCTTTTTAAGAAATGCTTGAGTATTGAAACCACTTG GTGAAGCATTATCAATGAAGTTACGGTAACCGCTCATAATCAAGGCAAAGAATCTTAAGAAAAT CAACCTAAGCTGAAAATCATGTTCCTGCCCCCATGATTTTGTGCCAGTCCGGAGAGAATGGTCA CCCATACTGCCAAGGTTGATTTTCATGTAATCAATACCCATTACATTGGGCTGTAGTAGTTTTA ATATCTCACCACGCAAGAAATTATGTTCAGTCTCTGGTATTGGAGGGATTTCTTCTGAGGTTGT AATCCGATTGTATTCGAGGTCTACCACCACAACACCATCCATTGTCACTGTGGATGTGTCAACA CCTGAATGAAGTCCCATCATGTAGGGTGTTGGAGCATCTATGTAATCAACCCCACTAGAGAAAA TTATTGGGATGTAGACATG
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.206069114

Conservation Information
Conserved circRNAs	NA
PMCS	0.206069114

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							22177535-22172373(+)
22177550-22172343(-)
						
					

						Potential amino acid sequence
						
							MKSHHVGCWSIYVINPTRENYWDVDMQFFYSNKLFIS*(+)
MMGLHSGVDTSTVTMDGVVVVDLEYNRITTSEEIPPIPETEHNFLRGEILKLLQPNVMGIDYMK
INLGSMGDHSLRTGTKSWGQEHDFQLRLIFLRFFALIMSGYRNFIDNASPSGFNTQAFLKKRSR
ATNQPVESMSMIMQFIETQGFLDYLERCNNAEENTNNLLDKLQDATGRGQNPLAIFPSHVADPE
IITIADSETGGSEPGKRFCYKRFPTNARTEEQEEKRKSILAVASGASKQVPNSPSIPTIGGGPK
VESLSPRERAAERERMVLDIKVKLQGLWLRLLRLGATEDPLSSFEYGTILALIESDAEGIGGSG
FVECIREHIHSGWQCRLTDEQFIAVKELHVYIPIIFSSGVDYIDAPTPYMMGLHSGVDTSTVTM
DGVVVVDLEYNRITTSEEIPPIPETEHNFLRGEILKLLQPNVMGIDYMKINLGSMGDHSLRTGT
KSWGQEHDFQLRLIFLRFFALIMSGYRNFIDNASPSGFNTQAFLKKRSRATNQPVESMSMIMQF
IETQGFLDYLERCNNAEENTNNLLDKLQDATGRGQNPLAIFPSHVADPEIITIADSETGGSEPG
KRFCYKRFPTNARTEEQEEKRKSILAVASGASKQVPNSPSIPTIGGGPKVESLSPRERAAERER
MVLDIKVKLQGLWLRLLRLGATEDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWQC
RLTDEQFIAVKELHVYIPIIFSSGVDYIDAPTPYMMGLHSGVDTSTVTMDGVVVVDLEYNRITT
SEEIPPIPETEHNFLRGEILKLLQPNVMGIDYMKINLGSMGDHSLRTGTKSWGQEHDFQLRLIF
LRFFALIMSGYRNFIDNASPSGFNTQAFLKKRSRATNQPVESMSMIMQFIETQGFLDYLERCNN
AEENTNNLLDKLQDATGRGQNPLAIFPSHVADPEIITIADSETGGSEPGKRFCYKRFPTNARTE
EQEEKRKSILAVASGASKQVPNSPSIPTIGGGPKVESLSPRERAAERERMVLDIKVKLQGLWLR
LLRLGATEDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWQCRLTDEQFIAVKELHV
YIPIIFSSGVDYIDAPTPYMMGLHSGVDTSTVTMDGVVVVDLEYNRITTSEEIPPIPETEHNFL
RGEILKLLQPNVMGIDYMKINLGSMGDHSLRTGTKSWGQEHDFQLRLIFLRFFALIMSGYRNFI
DNASPSGFNTQAFLKKRSRATNQPVESMSMIMQFIETQGFLDYLERCNNAEENTNNLLDKLQDA
TGRGQNPLAIFPSHVADPEIITIADSETGGSEPGKRFCYKRFPTNARTEEQEEKRKSILAVASG
ASKQVPNSPSIPTIGGGPKVESLSPRERAAERERMVLDIKVKLQGLWLRLLRLGATEDPLSSFE
YGTILALIESDAEGIGGSGFVECIREHIHSGWQCRLTDEQFIAVKEL(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	22177535-22172373(+) 22177550-22172343(-)
Potential amino acid sequence	MKSHHVGCWSIYVINPTRENYWDVDMQFFYSNKLFIS*(+) MMGLHSGVDTSTVTMDGVVVVDLEYNRITTSEEIPPIPETEHNFLRGEILKLLQPNVMGIDYMK INLGSMGDHSLRTGTKSWGQEHDFQLRLIFLRFFALIMSGYRNFIDNASPSGFNTQAFLKKRSR ATNQPVESMSMIMQFIETQGFLDYLERCNNAEENTNNLLDKLQDATGRGQNPLAIFPSHVADPE IITIADSETGGSEPGKRFCYKRFPTNARTEEQEEKRKSILAVASGASKQVPNSPSIPTIGGGPK VESLSPRERAAERERMVLDIKVKLQGLWLRLLRLGATEDPLSSFEYGTILALIESDAEGIGGSG FVECIREHIHSGWQCRLTDEQFIAVKELHVYIPIIFSSGVDYIDAPTPYMMGLHSGVDTSTVTM DGVVVVDLEYNRITTSEEIPPIPETEHNFLRGEILKLLQPNVMGIDYMKINLGSMGDHSLRTGT KSWGQEHDFQLRLIFLRFFALIMSGYRNFIDNASPSGFNTQAFLKKRSRATNQPVESMSMIMQF IETQGFLDYLERCNNAEENTNNLLDKLQDATGRGQNPLAIFPSHVADPEIITIADSETGGSEPG KRFCYKRFPTNARTEEQEEKRKSILAVASGASKQVPNSPSIPTIGGGPKVESLSPRERAAERER MVLDIKVKLQGLWLRLLRLGATEDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWQC RLTDEQFIAVKELHVYIPIIFSSGVDYIDAPTPYMMGLHSGVDTSTVTMDGVVVVDLEYNRITT SEEIPPIPETEHNFLRGEILKLLQPNVMGIDYMKINLGSMGDHSLRTGTKSWGQEHDFQLRLIF LRFFALIMSGYRNFIDNASPSGFNTQAFLKKRSRATNQPVESMSMIMQFIETQGFLDYLERCNN AEENTNNLLDKLQDATGRGQNPLAIFPSHVADPEIITIADSETGGSEPGKRFCYKRFPTNARTE EQEEKRKSILAVASGASKQVPNSPSIPTIGGGPKVESLSPRERAAERERMVLDIKVKLQGLWLR LLRLGATEDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWQCRLTDEQFIAVKELHV YIPIIFSSGVDYIDAPTPYMMGLHSGVDTSTVTMDGVVVVDLEYNRITTSEEIPPIPETEHNFL RGEILKLLQPNVMGIDYMKINLGSMGDHSLRTGTKSWGQEHDFQLRLIFLRFFALIMSGYRNFI DNASPSGFNTQAFLKKRSRATNQPVESMSMIMQFIETQGFLDYLERCNNAEENTNNLLDKLQDA TGRGQNPLAIFPSHVADPEIITIADSETGGSEPGKRFCYKRFPTNARTEEQEEKRKSILAVASG ASKQVPNSPSIPTIGGGPKVESLSPRERAAERERMVLDIKVKLQGLWLRLLRLGATEDPLSSFE YGTILALIESDAEGIGGSGFVECIREHIHSGWQCRLTDEQFIAVKEL(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os01g0575500_circ_g.7

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