Plant Circular RNA Database

Detail information of Os01g0575500_circ_g.8

			
						 General Information
					
						CircRNA Name
						Os01g0575500_circ_g.8
					
						ID in PlantcircBase
						osa_circ_002313
					
						Alias
						Os_ciR5852
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 22174470-22178337  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os01g0575500						
					
						Parent gene annotation
						
							Similar to predicted protein. (Os01t0575500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os01g0575500_circ_g.1 Os01g0575500_circ_g.2 Os01g0575500_circ_g.3 Os01g0575500_circ_g.4 Os01g0575500_circ_g.5 Os01g0575500_circ_g.6 Os01g0575500_circ_g.7 Os01g0575500_circ_g.9 Os01g0575500_circ_g.10 Os01g0575500_circ_g.11 Os01g0575500_circ_g.12 Os01g0575500_circ_g.13 Os01g0575500_circ_g.14 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0575500-01:8

General Information
CircRNA Name	Os01g0575500_circ_g.8
ID in PlantcircBase	osa_circ_002313
Alias	Os_ciR5852
Organism	Oryza sativa
Position	chr1: 22174470-22178337 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	find_circ
Parent gene	Os01g0575500
Parent gene annotation	Similar to predicted protein. (Os01t0575500-01)
Parent gene strand	-
Alternative splicing	Os01g0575500_circ_g.1 Os01g0575500_circ_g.2 Os01g0575500_circ_g.3 Os01g0575500_circ_g.4 Os01g0575500_circ_g.5 Os01g0575500_circ_g.6 Os01g0575500_circ_g.7 Os01g0575500_circ_g.9 Os01g0575500_circ_g.10 Os01g0575500_circ_g.11 Os01g0575500_circ_g.12 Os01g0575500_circ_g.13 Os01g0575500_circ_g.14
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0575500-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAGAAGGCAATTCTCAATGGCAAATAAAACACGATTCTTTCCTGGTGTTGGTAATGGAACTTTT
GACACCAAATGTGATATTATGTCCCACAATGGCTTGctgaacctccagtctcagaatcagctat
tgttatgatctcaggatcagcaacatgagaaggaaatattgccagagggttttgtcctctccca
gttgcatc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 983
Transcript exons: 22174470-22174665,22175441-22175530,22175875-22175929,22
176645-22176865,22177498-22177611,22177808-22177871,2217
7971-22178071,22178196-22178337
CTGAACCTCCAGTCTCAGAATCAGCTATTGTTATGATCTCAGGATCAGCAACATGAGAAGGAAA
TATTGCCAGAGGGTTTTGTCCTCTCCCAGTTGCATCCTGCAACTTATCAAGAAGGTTATTGGTG
TTTTCTTCTGCATTGTTGCATCTTTCCAGATAATCCAAGAATCCTTGTGTCTCTATAAACTGCA
TAATCATTGACATTGACTCAACAGGCTGATTAGTTGCACGTGAACGCTTTTTAAGAAATGCTTG
AGTATTGAAACCACTTGGTGAAGCATTATCAATGAAGTTACGGTAACCGCTCATAATCAAGGCA
AAGAATCTTAAGAAAATCAACCTAAGCTGAAAATCATGTTCCTGCCCCCATGATTTTGTGCCAG
TCCGGAGAGAATGGTCACCCATACTGCCAAGGTTGATTTTCATGTAATCAATACCCATTACATT
GGGCTGTAGTAGTTTTAATATCTCACCACGCAAGAAATTATGTTCAGTCTCTGGTATTGGAGGG
ATTTCTTCTGAGGTTGTAATCCGATTGTATTCGAGGTCTACCACCACAACACCATCCATTGTCA
CTGTGGATGTGTCAACACCTGAATGAAGTCCCATCATGTAGGGTGTTGGAGCATCTATGTAATC
AACCCCACTAGAGAAAATTATTGGGATGTAGACATGCTGCCACCTAAGTGGGTATATTAAATGG
CATATGGCTTCTGAAACTAGAGTCAACAGTGTATACTTATTTGATCGCAGCAATATCCTTCTTT
CAAGCAGAACTGCAGTAAATAATTGTATTAATTTATCAACATCTAGGCACTGCACCAATGGCTG
GAAGGATATATCGGCATGAGGAAGCCATTCTTTTGGAGGAGCCTCCACAGAAAGAAGGCAATTC
TCAATGGCAAATAAAACACGATTCTTTCCTGGTGTTGGTAATGGAACTTTTGACACCAAATGTG
ATATTATGTCCCACAATGGCTTG
						
					

						Genomic sequence
						
							CTGAACCTCCAGTCTCAGAATCAGCTATTGTTATGATCTCAGGATCAGCAACATGAGAAGGAAA
TATTGCCAGAGGGTTTTGTCCTCTCCCAGTTGCATCCTGCAACTTATCAAGAAGGTTATTGGTG
TTTTCTTCTGCATTGTTGCATCTTTCCAGATAATCCAAGAATCCTTGTGTCTCTATAAACTGCA
TAATCTGCCAAATAATCATGAAATTTTGTAGTTTATTAACAATGGATACAATCAAATTGACTTT
AGAATATTAACATTAAAAATACCTCCAGGCACATAACATAAAGTTAGAGAACTCTAGTTAGCTA
TTTGTAGGATTAAGAATAATCGAGAAAAATAAATAAATACTCCTCAATCCTCATTGACTTTTAC
AAGGCGCAGTTTGACTCAGTGCAGTCTATAAAACTAAAACTTGACCATTAGTTTCTTATAATTT
ATTCTGTATAACACAAAATCATGAGACATATTGCTAAACTAATTGAGTAATTGTTGATAAAAAC
TTATGAAGTTTGAACCTTGGGTGCACACTATATATCAACAGGTGTATGAATCATTATAGTACAA
CGGAAAATTTTCATGTAGCATCAACAAAGAAAAACCAGAATTTGTTTGAATCTGGACATGTTCA
ACAGGTGTATGAGACATTTTCATACATGAAGACCGCAGTATCTAATGTACCAGATGAAATCGAA
GTGAACTCAAAATTTCAGAAGTACAGAGCAAAAAGAGAAAAAAAGATCCCAACTCCAGGTCCAG
AGCTGAGACTAGTACCGTTAGAATTTATGACTTAAAACAGCTTAAGAAACTAAAAGTTGTCCAG
GTTCACCTTTTATTTTTCATATTTCTTGAAATGTCTAATAATTGAAATGGTCATTGATGAAAGC
ATTACATTTAGATAATAATAACAAACAGCCAAAAAGAAACCAAAAGAAAAGGTAGAACAGGAGT
AGTAAGCATACCATTGACATTGACTCAACAGGCTGATTAGTTGCACGTGAACGCTTTTTAAGAA
ATGCTTGAGTATTGAAACCACTTGGTGAAGCATTATCCTAAAAACAAAACTCAAACAAGTTACA
ACTCGAGCCTTTTAGACAAATATTTCCACCGTTACATACTATAAGTCATTTTAGGTTTGCCCTA
ACTCCCAAGTCAAACTTCTTCAAGTTTGACCAAGTTTACAGAAAAGCATAACAACATTTCTAAC
ACAAAAGAAGTATATTATTAAAATATATCCAATGATGGGTTTAGTGAAAATAATTTGGTGTTCT
AGATGTTGCTATGGTTTTCTAAAAACTTGGTCAAACTTGAAGTTTGATTTAGGGCAAACCCAAA
AATGACTTATAATATGGAACAAGGTCAGTAGCTGGCAGAAAACATATTAGACATAACTTACAAT
GAAGTTACGGTAACCGCTCATAATCAAGGCAAAGAATCTTAAGAAAATCAACCTGCATAAATGC
AGAACATCAGCTGATAAGATTGTTCCAATGATAATTTTTAACTGACAGAGAATGAAAGTCCCAG
AATTTCAATCATGACTACCTCAGTAGTATAAAAGCTCATGTTAGTCGCAGTATATTGTGTTAAC
TTGCAATAAAACAATGCATCGTGAAGAATCCTAAGCTCCCAATATGACATGTTGAGCATGCTTC
CTTTTTTTTCCAATTTCTAATGATTTAGCATGATCTGGTTTTGAGGTTGTTGTGTTTGTGTAAT
TGCGAATAGTCTTTAACTCTTTATGCACACCTGCTGGTCCCATGGGACAAGAAAGAATCAAGTA
AAATAGTCAAATTATTCACTTTTATGTGTATCTATGCTTGTGCAGGAATTGAATTAAACTTATC
ATATTTTTGTGTATGTTACAAGGCATGACCAATAGAATGCTAGCAAGATACTAGACCTACATTC
AATTGAGCATAATTCTATGCTACTAGAATTAGACCTACCATGAAATTGTATTAATTTGAAACTA
TATGTATTTTGTGTAAGTTACTAGTCTTACGTCCAAGAAACGCTAGCAAGACACCAGGTCTATA
TTCAACTGAATGTTAGTATGATTCTGTCCTACTAGTACCAGGCCTACCATGCTTACGTGAACCG
TGAGCATCATATAAATTTGAAATCATGCACAGTTACATGTTAAACAAAGTATAGTAAAATTACC
TAAGCTGAAAATCATGTTCCTGCCCCCATGATTTTGTGCCAGTCCGGAGAGAATGGTCACCCAT
ACTGCCAAGGTTGATTTTCATGTAATCAATACCCATTACATTGGGCTGTAGTAGTTTTAATATC
TCACCACGCAAGAAATTATGTTCAGTCTCTGGTATTGGAGGGATTTCTTCTGAGGTTGTAATCC
GATTGTATTCGAGGTCTACCACCACAACCTGGAATTACATCATTGTAGCTCATCAGAGTGGTTC
AATATGCAATACAACAAGTAACAAGGTATTGAAAAGTTTACATTGATAGGCAAACACAAAAAAT
TATTGCAACATAGTCTGAAAAATGCATTCAGCATGTACAGCAAGCTATATTTCTAAGCATCTGG
TCCATAGAACTAAAAGGCAAATCAACTTCTCTTGTTAAGGTCACTTTGATATGTGTAGTGAACA
TGTCAGGTGATACAACAGCAGATTAGTTTCAAGGAGAAATTGTCCACACATTTTGGAAGGTAAA
TATTGTGCTCCTAAGCTACATATAATAGTATGTGCACAAAAATTCTTCAGATAGAGTGACAAAA
TACTTTCACTCTAAGAATTTTGTAAGATACCTTGCTCATTATCAACCTAGTCTTATTCATGAGA
AGAATATTATGACAGTGTTTGCTTGTGAATAAATCAAGATATGGATTTAAACATGCATTCTAAA
AAGTAAAGCAATTCAGTCAGCAAAGAATCCAGTTCGCCAAATCAATTGTGAGAAGGCTTATTTC
ACAGTGCTAAATGTAAGTAGTAAAATACTCCAAAATAACAGAGGCAAGTAAAAACAAAAGTATT
AAATAATGGAACCAACTTACACCATCCATTGTCACTGTGGATGTGTCAACACCTGAATGAAGTC
CCATCATGTAGGGTGTTGGAGCATCTATGTAATCAACCCCACTAGAGAAAATTATTGGGATGTA
GACATGCTGCAGCATGACGAATAATTTGGGAGTAATTCACTCCATGATCAGGTAATGTAGTAAT
GTAGCAACAATGGGGACTTATGGGAACAAATACAAATGACTCTTTAGTTGCAAGTTTCAGCAAT
TGTCATCTGACATATTTGTGAAAACTGCGGAAAAACTTAGTAGTAAAAAAGGACAAATTTTGAA
TCAAACCTACCTGCCACCTAAGTGGGTATATTAAATGGCATATGGCTTCTGAAACTAGAGTCAA
CAGTGTATACCTGCATTGTTACGAATAAAAGAGAAACCCATCAAGCCTTAAATCAGCACAGGAA
TCAAGTTACAGCTACCAAAGTAACACTTGTTAAAATTCGACGCACTTATTTGATCGCAGCAATA
TCCTTCTTTCAAGCAGAACTGCAGTAAATAATTGTATTAATTTATCAACATCTAGGCACTGCAC
CAATGGCTGGAAGGATATCTGCAGTCACAGTAAGCTTAATTTAAGCAATGGATGCTTAAAAATG
GATCTATCAAGCTTAAGGAGTGAATGGTAATGGGAATATAGTAGAGAAACAAAAGAACAATGGA
AAAGAGGGCCATACATCGGCATGAGGAAGCCATTCTTTTGGAGGAGCCTCCACAGAAAGAAGGC
AATTCTCAATGGCAAATAAAACACGATTCTTTCCTGGTGTTGGTAATGGAACTTTTGACACCAA
ATGTGATATTATGTCCCACAATGGCTTG
						
					

			
		

Sequences
Splice junction sequence	AAGAAGGCAATTCTCAATGGCAAATAAAACACGATTCTTTCCTGGTGTTGGTAATGGAACTTTT GACACCAAATGTGATATTATGTCCCACAATGGCTTGctgaacctccagtctcagaatcagctat tgttatgatctcaggatcagcaacatgagaaggaaatattgccagagggttttgtcctctccca gttgcatc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 983 Transcript exons: 22174470-22174665,22175441-22175530,22175875-22175929,22 176645-22176865,22177498-22177611,22177808-22177871,2217 7971-22178071,22178196-22178337 CTGAACCTCCAGTCTCAGAATCAGCTATTGTTATGATCTCAGGATCAGCAACATGAGAAGGAAA TATTGCCAGAGGGTTTTGTCCTCTCCCAGTTGCATCCTGCAACTTATCAAGAAGGTTATTGGTG TTTTCTTCTGCATTGTTGCATCTTTCCAGATAATCCAAGAATCCTTGTGTCTCTATAAACTGCA TAATCATTGACATTGACTCAACAGGCTGATTAGTTGCACGTGAACGCTTTTTAAGAAATGCTTG AGTATTGAAACCACTTGGTGAAGCATTATCAATGAAGTTACGGTAACCGCTCATAATCAAGGCA AAGAATCTTAAGAAAATCAACCTAAGCTGAAAATCATGTTCCTGCCCCCATGATTTTGTGCCAG TCCGGAGAGAATGGTCACCCATACTGCCAAGGTTGATTTTCATGTAATCAATACCCATTACATT GGGCTGTAGTAGTTTTAATATCTCACCACGCAAGAAATTATGTTCAGTCTCTGGTATTGGAGGG ATTTCTTCTGAGGTTGTAATCCGATTGTATTCGAGGTCTACCACCACAACACCATCCATTGTCA CTGTGGATGTGTCAACACCTGAATGAAGTCCCATCATGTAGGGTGTTGGAGCATCTATGTAATC AACCCCACTAGAGAAAATTATTGGGATGTAGACATGCTGCCACCTAAGTGGGTATATTAAATGG CATATGGCTTCTGAAACTAGAGTCAACAGTGTATACTTATTTGATCGCAGCAATATCCTTCTTT CAAGCAGAACTGCAGTAAATAATTGTATTAATTTATCAACATCTAGGCACTGCACCAATGGCTG GAAGGATATATCGGCATGAGGAAGCCATTCTTTTGGAGGAGCCTCCACAGAAAGAAGGCAATTC TCAATGGCAAATAAAACACGATTCTTTCCTGGTGTTGGTAATGGAACTTTTGACACCAAATGTG ATATTATGTCCCACAATGGCTTG
Genomic sequence	CTGAACCTCCAGTCTCAGAATCAGCTATTGTTATGATCTCAGGATCAGCAACATGAGAAGGAAA TATTGCCAGAGGGTTTTGTCCTCTCCCAGTTGCATCCTGCAACTTATCAAGAAGGTTATTGGTG TTTTCTTCTGCATTGTTGCATCTTTCCAGATAATCCAAGAATCCTTGTGTCTCTATAAACTGCA TAATCTGCCAAATAATCATGAAATTTTGTAGTTTATTAACAATGGATACAATCAAATTGACTTT AGAATATTAACATTAAAAATACCTCCAGGCACATAACATAAAGTTAGAGAACTCTAGTTAGCTA TTTGTAGGATTAAGAATAATCGAGAAAAATAAATAAATACTCCTCAATCCTCATTGACTTTTAC AAGGCGCAGTTTGACTCAGTGCAGTCTATAAAACTAAAACTTGACCATTAGTTTCTTATAATTT ATTCTGTATAACACAAAATCATGAGACATATTGCTAAACTAATTGAGTAATTGTTGATAAAAAC TTATGAAGTTTGAACCTTGGGTGCACACTATATATCAACAGGTGTATGAATCATTATAGTACAA CGGAAAATTTTCATGTAGCATCAACAAAGAAAAACCAGAATTTGTTTGAATCTGGACATGTTCA ACAGGTGTATGAGACATTTTCATACATGAAGACCGCAGTATCTAATGTACCAGATGAAATCGAA GTGAACTCAAAATTTCAGAAGTACAGAGCAAAAAGAGAAAAAAAGATCCCAACTCCAGGTCCAG AGCTGAGACTAGTACCGTTAGAATTTATGACTTAAAACAGCTTAAGAAACTAAAAGTTGTCCAG GTTCACCTTTTATTTTTCATATTTCTTGAAATGTCTAATAATTGAAATGGTCATTGATGAAAGC ATTACATTTAGATAATAATAACAAACAGCCAAAAAGAAACCAAAAGAAAAGGTAGAACAGGAGT AGTAAGCATACCATTGACATTGACTCAACAGGCTGATTAGTTGCACGTGAACGCTTTTTAAGAA ATGCTTGAGTATTGAAACCACTTGGTGAAGCATTATCCTAAAAACAAAACTCAAACAAGTTACA ACTCGAGCCTTTTAGACAAATATTTCCACCGTTACATACTATAAGTCATTTTAGGTTTGCCCTA ACTCCCAAGTCAAACTTCTTCAAGTTTGACCAAGTTTACAGAAAAGCATAACAACATTTCTAAC ACAAAAGAAGTATATTATTAAAATATATCCAATGATGGGTTTAGTGAAAATAATTTGGTGTTCT AGATGTTGCTATGGTTTTCTAAAAACTTGGTCAAACTTGAAGTTTGATTTAGGGCAAACCCAAA AATGACTTATAATATGGAACAAGGTCAGTAGCTGGCAGAAAACATATTAGACATAACTTACAAT GAAGTTACGGTAACCGCTCATAATCAAGGCAAAGAATCTTAAGAAAATCAACCTGCATAAATGC AGAACATCAGCTGATAAGATTGTTCCAATGATAATTTTTAACTGACAGAGAATGAAAGTCCCAG AATTTCAATCATGACTACCTCAGTAGTATAAAAGCTCATGTTAGTCGCAGTATATTGTGTTAAC TTGCAATAAAACAATGCATCGTGAAGAATCCTAAGCTCCCAATATGACATGTTGAGCATGCTTC CTTTTTTTTCCAATTTCTAATGATTTAGCATGATCTGGTTTTGAGGTTGTTGTGTTTGTGTAAT TGCGAATAGTCTTTAACTCTTTATGCACACCTGCTGGTCCCATGGGACAAGAAAGAATCAAGTA AAATAGTCAAATTATTCACTTTTATGTGTATCTATGCTTGTGCAGGAATTGAATTAAACTTATC ATATTTTTGTGTATGTTACAAGGCATGACCAATAGAATGCTAGCAAGATACTAGACCTACATTC AATTGAGCATAATTCTATGCTACTAGAATTAGACCTACCATGAAATTGTATTAATTTGAAACTA TATGTATTTTGTGTAAGTTACTAGTCTTACGTCCAAGAAACGCTAGCAAGACACCAGGTCTATA TTCAACTGAATGTTAGTATGATTCTGTCCTACTAGTACCAGGCCTACCATGCTTACGTGAACCG TGAGCATCATATAAATTTGAAATCATGCACAGTTACATGTTAAACAAAGTATAGTAAAATTACC TAAGCTGAAAATCATGTTCCTGCCCCCATGATTTTGTGCCAGTCCGGAGAGAATGGTCACCCAT ACTGCCAAGGTTGATTTTCATGTAATCAATACCCATTACATTGGGCTGTAGTAGTTTTAATATC TCACCACGCAAGAAATTATGTTCAGTCTCTGGTATTGGAGGGATTTCTTCTGAGGTTGTAATCC GATTGTATTCGAGGTCTACCACCACAACCTGGAATTACATCATTGTAGCTCATCAGAGTGGTTC AATATGCAATACAACAAGTAACAAGGTATTGAAAAGTTTACATTGATAGGCAAACACAAAAAAT TATTGCAACATAGTCTGAAAAATGCATTCAGCATGTACAGCAAGCTATATTTCTAAGCATCTGG TCCATAGAACTAAAAGGCAAATCAACTTCTCTTGTTAAGGTCACTTTGATATGTGTAGTGAACA TGTCAGGTGATACAACAGCAGATTAGTTTCAAGGAGAAATTGTCCACACATTTTGGAAGGTAAA TATTGTGCTCCTAAGCTACATATAATAGTATGTGCACAAAAATTCTTCAGATAGAGTGACAAAA TACTTTCACTCTAAGAATTTTGTAAGATACCTTGCTCATTATCAACCTAGTCTTATTCATGAGA AGAATATTATGACAGTGTTTGCTTGTGAATAAATCAAGATATGGATTTAAACATGCATTCTAAA AAGTAAAGCAATTCAGTCAGCAAAGAATCCAGTTCGCCAAATCAATTGTGAGAAGGCTTATTTC ACAGTGCTAAATGTAAGTAGTAAAATACTCCAAAATAACAGAGGCAAGTAAAAACAAAAGTATT AAATAATGGAACCAACTTACACCATCCATTGTCACTGTGGATGTGTCAACACCTGAATGAAGTC CCATCATGTAGGGTGTTGGAGCATCTATGTAATCAACCCCACTAGAGAAAATTATTGGGATGTA GACATGCTGCAGCATGACGAATAATTTGGGAGTAATTCACTCCATGATCAGGTAATGTAGTAAT GTAGCAACAATGGGGACTTATGGGAACAAATACAAATGACTCTTTAGTTGCAAGTTTCAGCAAT TGTCATCTGACATATTTGTGAAAACTGCGGAAAAACTTAGTAGTAAAAAAGGACAAATTTTGAA TCAAACCTACCTGCCACCTAAGTGGGTATATTAAATGGCATATGGCTTCTGAAACTAGAGTCAA CAGTGTATACCTGCATTGTTACGAATAAAAGAGAAACCCATCAAGCCTTAAATCAGCACAGGAA TCAAGTTACAGCTACCAAAGTAACACTTGTTAAAATTCGACGCACTTATTTGATCGCAGCAATA TCCTTCTTTCAAGCAGAACTGCAGTAAATAATTGTATTAATTTATCAACATCTAGGCACTGCAC CAATGGCTGGAAGGATATCTGCAGTCACAGTAAGCTTAATTTAAGCAATGGATGCTTAAAAATG GATCTATCAAGCTTAAGGAGTGAATGGTAATGGGAATATAGTAGAGAAACAAAAGAACAATGGA AAAGAGGGCCATACATCGGCATGAGGAAGCCATTCTTTTGGAGGAGCCTCCACAGAAAGAAGGC AATTCTCAATGGCAAATAAAACACGATTCTTTCCTGGTGTTGGTAATGGAACTTTTGACACCAA ATGTGATATTATGTCCCACAATGGCTTG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.214339049

Conservation Information
Conserved circRNAs	NA
PMCS	0.214339049

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							22178057-22174470(+)
22178255-22174502(+)
22177550-22178320(-)
						
						Potential amino acid sequence
						
							MAGRIYRHEEAILLEEPPQKEGNSQWQIKHDSFLVLVMELLTPNVILCPTMAC*(+)
MANKTRFFPGVGNGTFDTKCDIMSHNGLLNLQSQNQLLL*(+)
MMGLHSGVDTSTVTMDGVVVVDLEYNRITTSEEIPPIPETEHNFLRGEILKLLQPNVMGIDYMK
INLGSMGDHSLRTGTKSWGQEHDFQLRLIFLRFFALIMSGYRNFIDNASPSGFNTQAFLKKRSR
ATNQPVESMSMIMQFIETQGFLDYLERCNNAEENTNNLLDKLQDATGRGQNPLAIFPSHVADPE
IITIADSETGGSASHCGT*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	22178057-22174470(+) 22178255-22174502(+) 22177550-22178320(-)
Potential amino acid sequence	MAGRIYRHEEAILLEEPPQKEGNSQWQIKHDSFLVLVMELLTPNVILCPTMAC(+) MANKTRFFPGVGNGTFDTKCDIMSHNGLLNLQSQNQLLL(+) MMGLHSGVDTSTVTMDGVVVVDLEYNRITTSEEIPPIPETEHNFLRGEILKLLQPNVMGIDYMK INLGSMGDHSLRTGTKSWGQEHDFQLRLIFLRFFALIMSGYRNFIDNASPSGFNTQAFLKKRSR ATNQPVESMSMIMQFIETQGFLDYLERCNNAEENTNNLLDKLQDATGRGQNPLAIFPSHVADPE IITIADSETGGSASHCGT*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os01g0575500_circ_g.8

Address

Any questions?

Supported by