Detail information of 5_circ_ag.5


General Information
CircRNA Name 5_circ_ag.5
ID in PlantcircBase ath_circ_038699
Alias NA
Organism Arabidpsis thaliana
Position chr5: 5574989-5579580  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.4 5_circ_ag.6 5_circ_ag.7 AT5G16970_circ_g.1 5_circ_ag.2 AT5G16970_circ_g.3 5_circ_ag.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10 5_circ_ag.11 5_circ_ag.12 5_circ_ag.13 5_circ_ag.14 AT5G17000_circ_g.1 AT5G17000_circ_g.2
Support reads 7
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACAGCGATACGCCCGTGCATGTTCATGTTCATAAGCACTGCATCTAGCATTTTGCCTCCTACA
TTCTCAAAGTATATGTCAATGCCATTAGGGAAACACctttttagggcaccaataagattgtgtt
cttccttgtagttgaaggcatcatcgaatccaaacttgttcttgaggagatcaacctaaagaag
ctcaacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTTAGGGCACCAATAAGATTGTGTTCTTCCTTGTAGTTGAAGGCATCATCGAATCCAAACT
TGTTCTTGAGGAGATCAACCTAAAGAAGCTCAACAAATCAAGATCCAATTACGAAAGCTAGAGT
TTCAAGTAAAACCTACCTTTTCTTTACTCCCAGCGCTTCCAACAACATAACAACCCATCAACTT
AGCAAATTGTCCTACAAGCTGACCAACCGCGCCAGATGCAGCCGACACAAACACAGTATCTCCT
TTCTTTGGAGTACATATCTCGTAAAACCCAACATACGCGGTCATACCAGGCATACCTTTCAAGA
ACAGAGGAGAGTGAAAATAATTACAATGTTGTTAACAACAACGGATCATAAGGCCTAGAGGAAG
GGGGATTAACAATACCAAGAAGTCCTGTGTAGTAAGATAAAGGAAAATTGGTATGATGGATCTT
GAAGTGAAGATTAGGAATTGGTGTAATAACACTGTACTCTTCCCATCCTACTGCTCCCCAAATT
AAGTCACCTTCTTCGTAATCTGAGTGTCCAGAATCTATCACTTTAGACACTCCAAACCCTGAGA
TAGGCTACACACAACACAACACAGCATAAGTCTCTCACAATTTTTTTATAGATGCGTTTAAGCG
ATGAACAATAAGTAGATGTTTTTACCTTGCCGGGAGTGAAGGACTGAGCAGTAGCAGGGCTCAG
AGGATCAGGTTTCCTCATACGATTTCGCATGTAAGGATCACAAGACAAGTAGAGATTCTTCACC
AACGCCGTCATAGATCCCTTTAGCACCCTAAGATCGATGGTGGTGGAGGTGATTACAAGGTCGG
ATTCCTTGGCGAAACCGGTTACGTAATCAAGTAACACGACTTGCTTGTTGATCGTTGTCGCCAT
TTTTTAGAAAATGTTTGTTTTTGGTTCCTCAACGTCTTTATTTGTCTCTACTTATACAAGCTCT
TCTACGGTTAGTGCGGTTATTAAAGCCACAAGTTGAGGAGATAATCTTTTTATTTGCTAAACTA
CTATTCTAACAATGCAAAACTAATGAAGCCAAACTTAGTTGTGTTAAGCATAATTTCTTGCGCT
TTTATGTGTGATGCAAACAATGTGGGGGGATTAAACAATGTTGCATACTTTAAGTTGATGTTTT
TTTAAAGAGAAAATCCAAACGCAAAGAAGAACCTAAACCGAATTTTGTATCTATTTGATTCGAA
ACCATAACAAACATTATCTTTATCCATAAAACAAAAACCACCCACACAAACTCTAATTGGATAA
AGTACAAGTATCAAACATAGTTTCACTCACGAGCAACAACAACAACTTGTTTCCCAACATTCTT
ACCATGGAAGAGTCCCACAAGAGCTTCGGGAGCTTTCTCAAGCCCATCAGCTACATCTTCCACG
TACGTTATCTTCCCTTCTCTAATGTGGGGAAGCACAAACTCCAAGAACTTTGAGTATTTGTCGT
AGAAATCAGACACTACAAAGCCTTGAATGCGGATTCTTTTGTAGATTATGTTGGATAGGTTGTG
TACACCTTCCTGGTTCTCAAGATTGTACTGTGAGATCATTCCACAGACAGCGATACGCCCGTGC
ATGTTCATGTTCACAAGCACTGCATCTAGCATTTTGCCTCCTACATTCTCAAAGTATATGTCAA
TGCCATTAGGGAAACACCTGGAAAAAAGGAGAATATCTCTTAGATTAGTCAAAACGCAATTGAC
AAGATCAATCGAAAAGTATTGCCACTTTATTATGCAAACCGATTCTAACATTTATAGGCATAAA
ACGCTTAGAAATAAGTAGTTCACCGAACCTTTTTAGGGCAGCAGTAAGGTCAGATTCTTCCTTG
TAGTTAAATGCATCATCAAACCCAAACTTGGTCTTCAGAAGATCAACCTAACGGATCCCCCAAA
AGTAAAACGGCTAATTAATCATTCTTTTGAAGGAGAACAAAGAAACATAAGGAAACAAAATATG
GAAATGATTATCAATTCCTCACCTTCTCTTTACTTCCAGCGCTTCCAACAACATAACAGCCCAT
CATCTTAGCAAGTTGTCCCACAAGCTGACCAACAGCACCAGATGCAGCTGACACATAAACTGTC
TCTCCTTCCTTTGGAGAACAAACTTCATAAAACCCAGCATAGGCAGTCATACCAGGCATACCTA
TTAGGACAAGACAAAAACCCATCAAAGAGTGAATATATGAAATAGATCAACAAACAAAACAGTT
GAAACCCTAGACTGAAGTTATAACCAATTCCATTCATATGTTTCTAAGATTTTTTAGAAATCCA
TAATAAAGGTTATGACCTCACTGTCTCAAGTCAAAACATTGTATCATCAAGAAGCAGATTTCCA
AAATTTTACAAAGTGATTCCACCTTACAAAACTATGAAAAAGGTTGAGATTAACATACCTAAAA
GTCCAGTGTAATAAGATAATGGAACATCAGTATGTTGGATCTTGAAATGCGCGTGAGTCATTGG
AGTGATAACACTGTACTCCTCCCATGCAACTATACCCCAGAGTAAATCTCCTTTCTTGTAATCT
GGATGTCCAGATTCTATTATTCTAGACACTCCATACCCTTGGATTGGCTACACCAAAACACACA
ACGGCAACAACAACAGTCAACACGATAGACATAGCAAAAAAACAGAACCAAGAGAGACACAATT
TCTTCTCAGTGTCTTCAAGAACACCAAATTGTCATCAATAAGAAGCATCTAGTTTCTTCACATG
CAAACCAAACAAAATAAACATTATCATCATTACCTGGCCGGGAGTGTAAGCTTGAGCAAGAGCA
GCAGTGGAAGGATCAGGTTTCCCCATGCGAATTCTCATGTAAGGATCGCATGACAAGTAGAGAT
TCTTCACTAGAACAGAGTTAGTACCTTCCGGAACCCTAAGTTCGACGGTGGTGGTAGTGAAATC
GAAATCGGATTCCGTAGGGAAACCACTCACGTAGTCTTTCAATATGACTTGCTTGTTCGTCGCC
GTCATCGTTGATTCTCGTGACTTCACCAAATTTGTTACTGCTTCTTCTTCGGTTTCTCTCGATG
ACGCCGCTGCTTTTATAGAGTCATCTCCAGTGTGCCACGAATTCATGATATCAACTTATCAAGT
ATGACGTCACTGCTTATGTGTTCTGATTTTTCACATTTTGGATTCTTTCTCTTTCGAGCGTTTT
TTTCTCTCTTTGACTTTCACATTCCTTTTGCATACCTTTTTTTTTCCTCTTACGTATCTCTCCT
TTCACATTTTGCTTTTCGTCTTTTTACACTAGAGAACTAATTCTAAACTCGTATTAAATTTCTC
ACTAATGATAGTAATTGGAAAAACTAGAGGTTTTTGACACCCTCAATACATTGTTAAGGTAAAT
GCAACTTTTTGCGGAGTCTTTTTGGAAATAAGATAGAAAACAGAGTTCGAAGGCTAAAACAGAG
CAATCTGGTGCTTAAGTTCTTCTTGTATGGAACCAGACGCGGAGTACGTCTTCGAGTTTCGTCG
AGCTATTTGGTATTAAACGTAACATTGTGGTTAATCCAGCTTCAATAGCTCTACTTTGAGTTAC
CAAAATTTAAACACGTTGTGGTCAATATCCTCGTTTGTTGGTCACCTAATTGACAAATTTGGGT
AGGTTTACTAATTTCCAAATGGCTAAAATGTGATTGGTCCAGTCCACTTTGCCAATTGATGAAA
GAAAAATTGAAATAGGTGGTAACGGTGAAAATAACTTTATAACATATCACACCAAACCCACAAA
ACAGTATCCCCATCTTCCGAATTAGTGTTCGCAACACTAACTGTTAAAACAGAGCACAAAACAG
AGCCATGTCCTATAATAAAGAAGAAAAGGAGTTGCACAAATTGTATTCATTGATGCTTAAACAC
GCATACTTGGGAACAAGAGCTAGAAACATGGGTTTGTATTAGGCTTCTTTTTTGGATTTGTGAG
AGAGGTTTTGGCTTGTTTGTTACTACTTACATACATTTTGTGAACCAAGTCACATAAAATGATA
AAACCAATAACAAACAAATTAATCTTACTGTATATACTATAATTACTATTATTCATAAACCAAA
AACTCACGGTTGGGTTCAACAGCCATACAAACTCTTGTTGGATAAATATAACATTTCTCCCAAA
TAAGTATTATTCCCTCACGAGCAATAAAACCTTACTCCCAATTAAAGTATTCATCATTCACGAG
CAATAACAACAACTTGTTTCCCAACATTCTTACCATGGAAGAGTCCCACGAGAGCTTCAGGACC
TTTCTCGAGCCCATCAGCTACATCTTCCACGTACGTTATCTTCCCTTCTTTAATGTGCGGATGC
AGAAACTCCAAGAACTTTGAGTATTCGTCGTAGAAATCAGACACTACAAAGCCTTGAATGCGGA
TTCGTTTGTAGATTATGTTGGATAGGTTGTGTACACCTTCTTGGTTCTCAAGATTGTACTGTGA
GATCATTCCACAGACAGCGATACGCCCGTGCATGTTCATGTTCATAAGCACTGCATCTAGCATT
TTGCCTCCTACATTCTCAAAGTATATGTCAATGCCATTAGGGAAACAC
Conservation Information
Conserved circRNAs NA
PMCS 0.244062029
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017