Detail information of 5_circ_ag.7


General Information
CircRNA Name 5_circ_ag.7
ID in PlantcircBase ath_circ_038701
Alias NA
Organism Arabidpsis thaliana
Position chr5: 5575388-5580066  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.4 5_circ_ag.5 5_circ_ag.6 AT5G16970_circ_g.1 5_circ_ag.2 AT5G16970_circ_g.3 5_circ_ag.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10 5_circ_ag.11 5_circ_ag.12 5_circ_ag.13 5_circ_ag.14 AT5G17000_circ_g.1 AT5G17000_circ_g.2
Support reads 42
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGACCAACAGCACCAGATGCAGCTGACACATAAACTGTCTCTCCTTTCTTTGGAGAACAGATCT
CATAAAACCCAACATATGCGGTCATACCAGGCATACcaagaagtcctgtgtagtaagataaagg
aaaattggtatgatggatcttgaagtgaagattaggaattggtgtaataacactgtactcttcc
catcctac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAGAAGTCCTGTGTAGTAAGATAAAGGAAAATTGGTATGATGGATCTTGAAGTGAAGATTAGG
AATTGGTGTAATAACACTGTACTCTTCCCATCCTACTGCTCCCCAAATTAAGTCACCTTCTTCG
TAATCTGAGTGTCCAGAATCTATCACTTTAGACACTCCAAACCCTGAGATAGGCTACACACAAC
ACAACACAGCATAAGTCTCTCACAATTTTTTTATAGATGCGTTTAAGCGATGAACAATAAGTAG
ATGTTTTTACCTTGCCGGGAGTGAAGGACTGAGCAGTAGCAGGGCTCAGAGGATCAGGTTTCCT
CATACGATTTCGCATGTAAGGATCACAAGACAAGTAGAGATTCTTCACCAACGCCGTCATAGAT
CCCTTTAGCACCCTAAGATCGATGGTGGTGGAGGTGATTACAAGGTCGGATTCCTTGGCGAAAC
CGGTTACGTAATCAAGTAACACGACTTGCTTGTTGATCGTTGTCGCCATTTTTTAGAAAATGTT
TGTTTTTGGTTCCTCAACGTCTTTATTTGTCTCTACTTATACAAGCTCTTCTACGGTTAGTGCG
GTTATTAAAGCCACAAGTTGAGGAGATAATCTTTTTATTTGCTAAACTACTATTCTAACAATGC
AAAACTAATGAAGCCAAACTTAGTTGTGTTAAGCATAATTTCTTGCGCTTTTATGTGTGATGCA
AACAATGTGGGGGGATTAAACAATGTTGCATACTTTAAGTTGATGTTTTTTTAAAGAGAAAATC
CAAACGCAAAGAAGAACCTAAACCGAATTTTGTATCTATTTGATTCGAAACCATAACAAACATT
ATCTTTATCCATAAAACAAAAACCACCCACACAAACTCTAATTGGATAAAGTACAAGTATCAAA
CATAGTTTCACTCACGAGCAACAACAACAACTTGTTTCCCAACATTCTTACCATGGAAGAGTCC
CACAAGAGCTTCGGGAGCTTTCTCAAGCCCATCAGCTACATCTTCCACGTACGTTATCTTCCCT
TCTCTAATGTGGGGAAGCACAAACTCCAAGAACTTTGAGTATTTGTCGTAGAAATCAGACACTA
CAAAGCCTTGAATGCGGATTCTTTTGTAGATTATGTTGGATAGGTTGTGTACACCTTCCTGGTT
CTCAAGATTGTACTGTGAGATCATTCCACAGACAGCGATACGCCCGTGCATGTTCATGTTCACA
AGCACTGCATCTAGCATTTTGCCTCCTACATTCTCAAAGTATATGTCAATGCCATTAGGGAAAC
ACCTGGAAAAAAGGAGAATATCTCTTAGATTAGTCAAAACGCAATTGACAAGATCAATCGAAAA
GTATTGCCACTTTATTATGCAAACCGATTCTAACATTTATAGGCATAAAACGCTTAGAAATAAG
TAGTTCACCGAACCTTTTTAGGGCAGCAGTAAGGTCAGATTCTTCCTTGTAGTTAAATGCATCA
TCAAACCCAAACTTGGTCTTCAGAAGATCAACCTAACGGATCCCCCAAAAGTAAAACGGCTAAT
TAATCATTCTTTTGAAGGAGAACAAAGAAACATAAGGAAACAAAATATGGAAATGATTATCAAT
TCCTCACCTTCTCTTTACTTCCAGCGCTTCCAACAACATAACAGCCCATCATCTTAGCAAGTTG
TCCCACAAGCTGACCAACAGCACCAGATGCAGCTGACACATAAACTGTCTCTCCTTCCTTTGGA
GAACAAACTTCATAAAACCCAGCATAGGCAGTCATACCAGGCATACCTATTAGGACAAGACAAA
AACCCATCAAAGAGTGAATATATGAAATAGATCAACAAACAAAACAGTTGAAACCCTAGACTGA
AGTTATAACCAATTCCATTCATATGTTTCTAAGATTTTTTAGAAATCCATAATAAAGGTTATGA
CCTCACTGTCTCAAGTCAAAACATTGTATCATCAAGAAGCAGATTTCCAAAATTTTACAAAGTG
ATTCCACCTTACAAAACTATGAAAAAGGTTGAGATTAACATACCTAAAAGTCCAGTGTAATAAG
ATAATGGAACATCAGTATGTTGGATCTTGAAATGCGCGTGAGTCATTGGAGTGATAACACTGTA
CTCCTCCCATGCAACTATACCCCAGAGTAAATCTCCTTTCTTGTAATCTGGATGTCCAGATTCT
ATTATTCTAGACACTCCATACCCTTGGATTGGCTACACCAAAACACACAACGGCAACAACAACA
GTCAACACGATAGACATAGCAAAAAAACAGAACCAAGAGAGACACAATTTCTTCTCAGTGTCTT
CAAGAACACCAAATTGTCATCAATAAGAAGCATCTAGTTTCTTCACATGCAAACCAAACAAAAT
AAACATTATCATCATTACCTGGCCGGGAGTGTAAGCTTGAGCAAGAGCAGCAGTGGAAGGATCA
GGTTTCCCCATGCGAATTCTCATGTAAGGATCGCATGACAAGTAGAGATTCTTCACTAGAACAG
AGTTAGTACCTTCCGGAACCCTAAGTTCGACGGTGGTGGTAGTGAAATCGAAATCGGATTCCGT
AGGGAAACCACTCACGTAGTCTTTCAATATGACTTGCTTGTTCGTCGCCGTCATCGTTGATTCT
CGTGACTTCACCAAATTTGTTACTGCTTCTTCTTCGGTTTCTCTCGATGACGCCGCTGCTTTTA
TAGAGTCATCTCCAGTGTGCCACGAATTCATGATATCAACTTATCAAGTATGACGTCACTGCTT
ATGTGTTCTGATTTTTCACATTTTGGATTCTTTCTCTTTCGAGCGTTTTTTTCTCTCTTTGACT
TTCACATTCCTTTTGCATACCTTTTTTTTTCCTCTTACGTATCTCTCCTTTCACATTTTGCTTT
TCGTCTTTTTACACTAGAGAACTAATTCTAAACTCGTATTAAATTTCTCACTAATGATAGTAAT
TGGAAAAACTAGAGGTTTTTGACACCCTCAATACATTGTTAAGGTAAATGCAACTTTTTGCGGA
GTCTTTTTGGAAATAAGATAGAAAACAGAGTTCGAAGGCTAAAACAGAGCAATCTGGTGCTTAA
GTTCTTCTTGTATGGAACCAGACGCGGAGTACGTCTTCGAGTTTCGTCGAGCTATTTGGTATTA
AACGTAACATTGTGGTTAATCCAGCTTCAATAGCTCTACTTTGAGTTACCAAAATTTAAACACG
TTGTGGTCAATATCCTCGTTTGTTGGTCACCTAATTGACAAATTTGGGTAGGTTTACTAATTTC
CAAATGGCTAAAATGTGATTGGTCCAGTCCACTTTGCCAATTGATGAAAGAAAAATTGAAATAG
GTGGTAACGGTGAAAATAACTTTATAACATATCACACCAAACCCACAAAACAGTATCCCCATCT
TCCGAATTAGTGTTCGCAACACTAACTGTTAAAACAGAGCACAAAACAGAGCCATGTCCTATAA
TAAAGAAGAAAAGGAGTTGCACAAATTGTATTCATTGATGCTTAAACACGCATACTTGGGAACA
AGAGCTAGAAACATGGGTTTGTATTAGGCTTCTTTTTTGGATTTGTGAGAGAGGTTTTGGCTTG
TTTGTTACTACTTACATACATTTTGTGAACCAAGTCACATAAAATGATAAAACCAATAACAAAC
AAATTAATCTTACTGTATATACTATAATTACTATTATTCATAAACCAAAAACTCACGGTTGGGT
TCAACAGCCATACAAACTCTTGTTGGATAAATATAACATTTCTCCCAAATAAGTATTATTCCCT
CACGAGCAATAAAACCTTACTCCCAATTAAAGTATTCATCATTCACGAGCAATAACAACAACTT
GTTTCCCAACATTCTTACCATGGAAGAGTCCCACGAGAGCTTCAGGACCTTTCTCGAGCCCATC
AGCTACATCTTCCACGTACGTTATCTTCCCTTCTTTAATGTGCGGATGCAGAAACTCCAAGAAC
TTTGAGTATTCGTCGTAGAAATCAGACACTACAAAGCCTTGAATGCGGATTCGTTTGTAGATTA
TGTTGGATAGGTTGTGTACACCTTCTTGGTTCTCAAGATTGTACTGTGAGATCATTCCACAGAC
AGCGATACGCCCGTGCATGTTCATGTTCATAAGCACTGCATCTAGCATTTTGCCTCCTACATTC
TCAAAGTATATGTCAATGCCATTAGGGAAACACCTGGAAAAAAACGGAGAATATCTCTTAGATT
GGTCAAAACGCAATTGAGAAGATCAATCAAAAAGTATTGCCGCTTTATTATGCAAACGGATTCT
AACATTTATAGGCATAAAACACTTAGAAATAAGTAGTTTACTGAACCTTTTGAGCGCAGCACTA
AGGTCAGGTTCTTCCTTGTAGTTAAATGCATAATCAAACCCAAACTTGGTCTTCAGGAGATCAA
CCTAACAGATACCCCAAAAATGGTTAATCATACTCTTGAAGGAGAACCAAGAAATATAAGGAAT
CAAAATATAGAAAATAATGATCAAATTCTCACCTTTTCTTTGCTACCAGCACTTCCAACAACAT
AACAGCCCATCATCTTAGCAAATTGTCCCACAAGCTGACCAACAGCACCAGATGCAGCTGACAC
ATAAACTGTCTCTCCTTTCTTTGGAGAACAGATCTCATAAAACCCAACATATGCGGTCATACCA
GGCATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.477473649
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017