Plant Circular RNA Database

Detail information of 5_circ_ag.12

			
						 General Information
					
						CircRNA Name
						5_circ_ag.12
					
						ID in PlantcircBase
						ath_circ_038713
					
						Alias
						5:5582650-5585679
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 5582650-5585679  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							5_circ_ag.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 AT5G16970_circ_g.1 5_circ_ag.2 AT5G16970_circ_g.3 5_circ_ag.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10 5_circ_ag.11 5_circ_ag.13 5_circ_ag.14 AT5G17000_circ_g.1 AT5G17000_circ_g.2 						
					
						Support reads
						2/2/2/3
					
						Tissues
						seedling;root;flower
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	5_circ_ag.12
ID in PlantcircBase	ath_circ_038713
Alias	5:5582650-5585679
Organism	Arabidpsis thaliana
Position	chr5: 5582650-5585679 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	5_circ_ag.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 AT5G16970_circ_g.1 5_circ_ag.2 AT5G16970_circ_g.3 5_circ_ag.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10 5_circ_ag.11 5_circ_ag.13 5_circ_ag.14 AT5G17000_circ_g.1 AT5G17000_circ_g.2
Support reads	2/2/2/3
Tissues	seedling;root;flower
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAAGTAGTTCACTGAACCTTTTGAGGGCAGCACTAAGGTCTGGTTCTTCCTTGTAGTTAAATGC
ATCATCAAACCCAAACTTGGTCTTCAGAAGATCAACcttttctttacttccagcgcttccaaca
acataacagcccatcatcttagcaaattgtcccacaagctgaccaaccgcaccagatgcagctg
acacataa

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTTTCTTTACTTCCAGCGCTTCCAACAACATAACAGCCCATCATCTTAGCAAATTGTCCCACA
AGCTGACCAACCGCACCAGATGCAGCTGACACATAAACTGTCTCTCCTTTCTTTGGAGAACAAA
CTTCATAAAACCCAGCATAGGCAGTCATACCAGGCATACCTGTCAAGAACAGAGAAAACCAATC
AGGAGAGAATATATTGAACATATCAACAAACCAAACGTTCGAAACTCTAGTCTTCTACATTGAA
GTTTAAAACTCGACATAACTAATTCCATTTCCCACACACCGGTTTCATCATTCAAAACTATTAT
ACATGGTTATGACATTCAACTTCATGATCTCTGTCTAAAATTACCAAGTGATTCCACATTTTCC
ACTTACAAAACAAGGAGCAAGGCATAGATTAACATACCGAGAAGTCCAGTATAGTAGGATAATG
GAACATCTGTATGTTGGATCTTGAAATGCATGTGAGCCATTGGTGTAATAACACTATACTCCTC
CCATCCAACTATTCCCCAGAGTAAATCACCTTTCTTGTAATCTGGATGCCCAGATTCTATCACT
CTAGACACTCCATACCCATAGATTGGCTGCACCAAAAACACACAATGCAACAACAACAGTCAAC
ACGAGAGAAAGCAAAAAACACAAAGAGACAAAATTTATTGTCAGAGTCTTCTTCAAGAACCCCA
ATCTGAAGTTTTTATACCATTGTCATCTAGTTTATATAAATAAGAAGCATCCTGATTAATTTAA
GTACAGAAATAATCCAACATTAAACTAGAACAGTTGATCCGTTTGTTATATAATAAGACATCAT
TCTGGTCACAAAGTATAATTTATTATATCTCAACATATAAAACCAAACCAAACAAAACAAAACA
AAACAAAACATTTTCATCCGATTTGAATTTCACCGGAGATCTTCCTAATCGGAGATTAAAAGTA
GATCCTCGTCGTTCATACCTTGCCGGGAGCGTAAGCTTGAGCAAGAGCAGAGGAGGGATCAGGT
TTCCCCATGCGAGACCGCATATAAGGATCGCATGACAGGTAGAGATTCTTCACAAGAACCGATT
TAGAACCTTCCGGAACCCTAAGTTCGACGGTGGTGGTGGTGAAATTGAAATCGGATTCCTTAGG
GAAACCACTCACGTGGTCTTTGAATATGACCTGCTTGTTCGTCGTCATCGTTGTTATTCTCCGA
TTCAACTTCTGATTTCCACCAATTTGTTACTTCTTCTTCTTCTTCTTCGAGGACGCGCCTGCTT
TTTATAGTGGCCTCTCACTCGTAATATCAAGTATGAAGTCACTGCTCATGATGATTCATCACAA
TATGTTCACAATTTTTAAACTCTTTCGAGCGTTTTTATTGTTGACACTTTCACATTTTGTGATA
TATTTTCATTTCCTTTCACATTTCATTTTCTTTCCAATTCTCTCTTCTGTCACATTTTCACAAG
AGTTGGTGTTTATACATTACTGATATAGGAAAAGGATGGTGATAAATGAGTGACACGTGGACGG
TGGTAATTGAAGATTAAAAGCAACGGTCAATATTAAGAACAGAAGAATGAGGTCAATAAGAAGC
TGAAGACACTTCATTATGCTAAAATCTGAGATTGTATCTTCTTCTTCATTTTGTTCTCTGTTAC
TACTTGAGAATTCTCTGTAATTCTCAAGCTATTCCTCATCGTTTACCGGAGCTTCTCTCTTGAG
ACTCTTGTAGATGAGAAGTTGATGTTGCGTTTCATGAACGTCGTATCAAATTATCAATCTATAT
CTTTCGAATCCATTTTCCTCTTTATTATCTGATTTACGTTATCAATTACAAAAGAACACACCTC
ATCGTTTTAGAGACATTTGGCTTCAATTTCCTCAAGTGTCAAGTGTGGTCCCTTTGTCTCTGGA
ACATCGAAGATTCTTAAGACCAGAGACAAAACACATATCACACCAAACCCACAAAACAGTATCC
CAGCTCCAAATAGTTCTCGCAAAACAGAGCCATGTGATTGTTAATCGTGATGTCCTCTAATAAA
GAAGAAAAGGAGTTGCACAAATAGCAACACTAACTTAATTACATTTTTGAATTTGTGAGAGGGG
TTTGAGATTGTTTGTTACTACCTTGATACATTTGAATTTGATAAACAAGTCACACAGAAAATGA
TTCAAAACCATAACGAACGAACAAATTGATACATATTAAAAAATTACTTGAATTACTAGTAATC
TAGTATTTATAAACCAAAACCTCAGGCTTGGATTCGAACACCCATACAAAATCTTTTGGATACA
TACAACATTACTCCCATAGATATATATATTCACTCACGAGCAATAACAACAACTTGTTTTCCAA
CGTTCTTACCATGGAAGAGTCCCACAAGAGCTTCAGGACCTTTCTCAAGCCCATCAGCTACATC
TTCCACGTACGTGATCTTCCCTTCTTTAATGTGCGGAAGCACAAAATCCAAGAACTTTGAGTAT
TTCTCGTAGAAATCAAACACTGCAAAGCCTTGAATGCGGATTCTTTTGTAGATTATGTTGGATA
GGTTGTGTACACCTTCTTGGTTTTCAAGATTGTACTGTGAGATCATTCCACACACAGCGATACG
TCCGTGTGGGTTCATGTTTAATAGCACTGCGTCTAGCATTTTGCCTCCTACGTTTTCAAAGTAT
ATGTCAATGCCTGTAGGGAAACACCTGCAAAAGATAAAGGAGAGAGAATGTCTCTTAGATTAGT
CAAACAGCAGTTGATAAACCTTAGATTACTCATTGGTTTGACCAGCCTGTTGTCAAGGCCGGCT
CTGGATCATGGTGTTCATGCTTTGATCAATTTCTTTTGTTTCTACTTTAGTTGTGAATTGCCGC
TTTCTTATGTAAACCGATCCTAACAGTTAAAGACATCAAGCGCTTAGAAATAAGTAGTTCACTG
AACCTTTTGAGGGCAGCACTAAGGTCTGGTTCTTCCTTGTAGTTAAATGCATCATCAAACCCAA
ACTTGGTCTTCAGAAGATCAAC
						
					

			
		

Sequences
Splice junction sequence	TAAGTAGTTCACTGAACCTTTTGAGGGCAGCACTAAGGTCTGGTTCTTCCTTGTAGTTAAATGC ATCATCAAACCCAAACTTGGTCTTCAGAAGATCAACcttttctttacttccagcgcttccaaca acataacagcccatcatcttagcaaattgtcccacaagctgaccaaccgcaccagatgcagctg acacataa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTTTCTTTACTTCCAGCGCTTCCAACAACATAACAGCCCATCATCTTAGCAAATTGTCCCACA AGCTGACCAACCGCACCAGATGCAGCTGACACATAAACTGTCTCTCCTTTCTTTGGAGAACAAA CTTCATAAAACCCAGCATAGGCAGTCATACCAGGCATACCTGTCAAGAACAGAGAAAACCAATC AGGAGAGAATATATTGAACATATCAACAAACCAAACGTTCGAAACTCTAGTCTTCTACATTGAA GTTTAAAACTCGACATAACTAATTCCATTTCCCACACACCGGTTTCATCATTCAAAACTATTAT ACATGGTTATGACATTCAACTTCATGATCTCTGTCTAAAATTACCAAGTGATTCCACATTTTCC ACTTACAAAACAAGGAGCAAGGCATAGATTAACATACCGAGAAGTCCAGTATAGTAGGATAATG GAACATCTGTATGTTGGATCTTGAAATGCATGTGAGCCATTGGTGTAATAACACTATACTCCTC CCATCCAACTATTCCCCAGAGTAAATCACCTTTCTTGTAATCTGGATGCCCAGATTCTATCACT CTAGACACTCCATACCCATAGATTGGCTGCACCAAAAACACACAATGCAACAACAACAGTCAAC ACGAGAGAAAGCAAAAAACACAAAGAGACAAAATTTATTGTCAGAGTCTTCTTCAAGAACCCCA ATCTGAAGTTTTTATACCATTGTCATCTAGTTTATATAAATAAGAAGCATCCTGATTAATTTAA GTACAGAAATAATCCAACATTAAACTAGAACAGTTGATCCGTTTGTTATATAATAAGACATCAT TCTGGTCACAAAGTATAATTTATTATATCTCAACATATAAAACCAAACCAAACAAAACAAAACA AAACAAAACATTTTCATCCGATTTGAATTTCACCGGAGATCTTCCTAATCGGAGATTAAAAGTA GATCCTCGTCGTTCATACCTTGCCGGGAGCGTAAGCTTGAGCAAGAGCAGAGGAGGGATCAGGT TTCCCCATGCGAGACCGCATATAAGGATCGCATGACAGGTAGAGATTCTTCACAAGAACCGATT TAGAACCTTCCGGAACCCTAAGTTCGACGGTGGTGGTGGTGAAATTGAAATCGGATTCCTTAGG GAAACCACTCACGTGGTCTTTGAATATGACCTGCTTGTTCGTCGTCATCGTTGTTATTCTCCGA TTCAACTTCTGATTTCCACCAATTTGTTACTTCTTCTTCTTCTTCTTCGAGGACGCGCCTGCTT TTTATAGTGGCCTCTCACTCGTAATATCAAGTATGAAGTCACTGCTCATGATGATTCATCACAA TATGTTCACAATTTTTAAACTCTTTCGAGCGTTTTTATTGTTGACACTTTCACATTTTGTGATA TATTTTCATTTCCTTTCACATTTCATTTTCTTTCCAATTCTCTCTTCTGTCACATTTTCACAAG AGTTGGTGTTTATACATTACTGATATAGGAAAAGGATGGTGATAAATGAGTGACACGTGGACGG TGGTAATTGAAGATTAAAAGCAACGGTCAATATTAAGAACAGAAGAATGAGGTCAATAAGAAGC TGAAGACACTTCATTATGCTAAAATCTGAGATTGTATCTTCTTCTTCATTTTGTTCTCTGTTAC TACTTGAGAATTCTCTGTAATTCTCAAGCTATTCCTCATCGTTTACCGGAGCTTCTCTCTTGAG ACTCTTGTAGATGAGAAGTTGATGTTGCGTTTCATGAACGTCGTATCAAATTATCAATCTATAT CTTTCGAATCCATTTTCCTCTTTATTATCTGATTTACGTTATCAATTACAAAAGAACACACCTC ATCGTTTTAGAGACATTTGGCTTCAATTTCCTCAAGTGTCAAGTGTGGTCCCTTTGTCTCTGGA ACATCGAAGATTCTTAAGACCAGAGACAAAACACATATCACACCAAACCCACAAAACAGTATCC CAGCTCCAAATAGTTCTCGCAAAACAGAGCCATGTGATTGTTAATCGTGATGTCCTCTAATAAA GAAGAAAAGGAGTTGCACAAATAGCAACACTAACTTAATTACATTTTTGAATTTGTGAGAGGGG TTTGAGATTGTTTGTTACTACCTTGATACATTTGAATTTGATAAACAAGTCACACAGAAAATGA TTCAAAACCATAACGAACGAACAAATTGATACATATTAAAAAATTACTTGAATTACTAGTAATC TAGTATTTATAAACCAAAACCTCAGGCTTGGATTCGAACACCCATACAAAATCTTTTGGATACA TACAACATTACTCCCATAGATATATATATTCACTCACGAGCAATAACAACAACTTGTTTTCCAA CGTTCTTACCATGGAAGAGTCCCACAAGAGCTTCAGGACCTTTCTCAAGCCCATCAGCTACATC TTCCACGTACGTGATCTTCCCTTCTTTAATGTGCGGAAGCACAAAATCCAAGAACTTTGAGTAT TTCTCGTAGAAATCAAACACTGCAAAGCCTTGAATGCGGATTCTTTTGTAGATTATGTTGGATA GGTTGTGTACACCTTCTTGGTTTTCAAGATTGTACTGTGAGATCATTCCACACACAGCGATACG TCCGTGTGGGTTCATGTTTAATAGCACTGCGTCTAGCATTTTGCCTCCTACGTTTTCAAAGTAT ATGTCAATGCCTGTAGGGAAACACCTGCAAAAGATAAAGGAGAGAGAATGTCTCTTAGATTAGT CAAACAGCAGTTGATAAACCTTAGATTACTCATTGGTTTGACCAGCCTGTTGTCAAGGCCGGCT CTGGATCATGGTGTTCATGCTTTGATCAATTTCTTTTGTTTCTACTTTAGTTGTGAATTGCCGC TTTCTTATGTAAACCGATCCTAACAGTTAAAGACATCAAGCGCTTAGAAATAAGTAGTTCACTG AACCTTTTGAGGGCAGCACTAAGGTCTGGTTCTTCCTTGTAGTTAAATGCATCATCAAACCCAA ACTTGGTCTTCAGAAGATCAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.653511916

Conservation Information
Conserved circRNAs	NA
PMCS	0.653511916

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							ath-miR866-3p 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	ath-miR866-3p
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 5_circ_ag.12

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