Detail information of 4_circ_ag.22


General Information
CircRNA Name 4_circ_ag.22
ID in PlantcircBase ath_circ_030451
Alias At_ciR290
Organism Arabidpsis thaliana
Position chr4: 7120374-7124497  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 4_circ_ag.8 4_circ_ag.9 AT4G11830_circ_g.1 4_circ_ag.2 4_circ_ag.3 4_circ_ag.4 4_circ_ag.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 4_circ_ag.9 4_circ_ag.10 4_circ_ag.11 4_circ_ag.12 4_circ_ag.13 4_circ_ag.14 4_circ_ag.15 4_circ_ag.16 4_circ_ag.17 4_circ_ag.18 4_circ_ag.19 4_circ_ag.20 4_circ_ag.21 4_circ_ag.23 4_circ_ag.24 4_circ_ag.25 4_circ_ag.26 4_circ_ag.27 4_circ_ag.28 AT4G11840_circ_g.1 4_circ_ag.2 4_circ_ag.3 4_circ_ag.4 4_circ_ag.5 4_circ_ag.6 AT4G11845_circ_g.1 4_circ_ag.2 AT4G11845_circ_g.3 AT4G11850_circ_g.1 AT4G11850_circ_g.2
Support reads 9/5
Tissues leaf/root, aerial, inflorescences, whole_plant
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGACCTTTCCCTCCATATCTAGGACAAAGGAGAACTTGCACCGATGAGTGCTTGAAAAAACG
GCGAGTCTCCTCATCGCTTGTGTTCATAAGTCCTTTcctttagaagtttccatccgcagacatt
ttccgtatagcaccaaggtaatcatcgtctattccagcagcaacaccacgatacgaaactcgag
gctcgaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTAGAAGTTTCCATCCGCAGACATTTTCCGTATAGCACCAAGGTAATCATCGTCTATTCCA
GCAGCAACACCACGATACGAAACTCGAGGCTCGAAAGAACTGTAACATAAACAATCTGAGTCAT
TGATAATAGGTTATAACTGAAACGTGTAGTCAATGTCGTAACACAACAAATCATGCCAACTAGT
CCTCTATGAAGTGCTAATCACCGAGAGTATCGAAAAGACACATGAATGAAACCTATCAAAAGAT
CTATTTAGAATAAAAACAGAGCTTGTAAAACTATTCATTGATAAACTACATTTCAAACTGGATC
GCAAAATATTCACCTTTACTAGTAACTGACATAGCCTTGAATTAGTGTGACACATTCCAATCAA
ATAAAAACTATAAATCTGCAACCTTTCTTATTCAACTGAGCAATAGAAGATGATCAATTATGAA
TTTCTAAACCCTAATTTCTCGAACAAAATCAGAAAACTAGTAATCAATCCAATAATTATATCCA
CCACGATCCAGTGAAAGTCAAACAAATGCAAATCAGAGAGAGAGAGAGAATACATACCCGAATA
GAAACCTAGACGCAAAGGGAGCAGTGGCGGCGGAAGAGAAGGAAGATGAGTGAAGACTGTGCTT
GGATTGAGATTTCTTCAGTAGATCTAAAACTATAGCTATTCTCGCCATTACTAACAAACCCAAG
CTTGATTCGATCGAATACACAAATCTCTCTCTCTATGCCTCTTAATCTCAATTGAAGTAATCTT
CCTCGTTTCTACATCGGAGACTCGTCCGAGTGGTTCCGATTAAACTCCAAATCGCCTCCGGTGT
AGCCTTTGAAGAGAAACGCGTGAAAGAGAGAGAGAAACACGGGAGTCGATTTTTATTTTCTCTT
TATATATTTTCCCTTCACCCACTCACACAACGACACGTCACCCGTCTCTTAGAGATTCTTTTGG
CAAACAGAAGACTTTTACCTGTTGCTCTGGATGATTTTTGGTCTGAGATTCAGAATGGGAAAGT
TTCTTGAGGAAGGAAGCAAGATTGTTCTAACCACATCAAGTGAAATTGTCTCCACAGTAGCAAA
GGATGAAAAAATCTACCAAATGAAGAATGTTGGGAGCTGATCTCTAGATTTCCTTTTGGAAATA
TAATCAACCAAGAACTAGAAGGAATTGGGAAAAGGATTGCAGAACAGTGTAAGGTCTTGAACGA
GCCATTGCATCAAAGAATTTCTCAAGCTACACTAACAGTATCCTTCCAGTACTTAAACCAAGCT
ATGACTCTCTTCCTCCTCAACTTAAGCGATGCTTTGCCCTCTGCTCAATTACTGCTGCTATGGA
TGGCAATAGACCTCTTATACCAACCAAGGAGCAGCACAAGATTGGAAAAATTACCTTGGTGATT
TAGTTTGCTCAAATCTTTTTTTCAGAGATTGGATATCACCATGACAAGCTTTGTGATGCATGAT
CTTATGAATGATTTGGCAAAAGCTCTTTCAGGATGACATTTTTCATTTTCTACAAGCCAATGTG
ATATTGTAATCATATAGTACTAAAGATATGACAACATTACTAAATTAAATCATATAGTAAAAAT
CCACAACACACACTTTGATAGATCAATTGAAATATTGTAATAAATAGATTTACAGCTCATAAAT
TTGAAAAACTAGACCCTAAAGGCACACTTTCAATCAGATCACACTCAGATAGATTTCTTGAAGT
GAAGGAAATAAAGAACAAATGTTGATCACTACAAGCCTACAAGGTAAGTTTCATATGGTGAGGT
TTTCTTCTACTACAAGGAACGATCCTATGATCTTGCCACCGAGATCTGGGAATGTCTCGTATCC
AGGAAGAGAACTCACTTTGCCTGTTCTATCAACTTGAACTGGATACTTAAGAAGATGACCTGGC
ATCTCTGTGACTTCTTCCGCTGCATATTGTCTCCAATTCAGCTCACTCAATTGCCTAACTCGTC
TCACGCATTCCATGTTCTCTGGTTCCTCGAATTCTTGCTCTAGAAACCCTAGATGTTCTGCCCA
TAACGACATTCTATATCCAAAGATCTGCAAGAAATTGAGACAAACCAGGGTTCAGACATGTTAA
AGAGAACATACATTGGTGGGTTTCTAGATTTTCGTCTTAGAATGCTATCCTAGATTGAGAAGTA
GAAGTCTCTGAAAGTCTTATTTACCTGACCACGAGGACGAGAACCTTTCTTAGCCCATGAATGG
TGTGGCTGATACCCTCCCATAGCGATTTCAGTGTCTCTAGTTCCTTCCAAGGATCTCTGGTTGA
TATTCGCGGAACCAATTAAGACAAACTCATCATCCACTACCATACCTTTGGAATGAACATATAT
CATGAATCTCCGACTCTTCAAAGCTTGTACCTAGATTGGTTTGTCGTTTTAATCAGTAAGCGAA
CCCATTAAGGCAAAATCGAAGATTTCAAAAGAAGACATTTAATATATGTATACCTGTGCAGCAT
TTAGCTGAGGTGGCTTCCGAGGACTATTATATACGCTAACAGTTCCATCAGGAACCTCTCTGGT
TCCAACCTCTCTGGTTCCAAGACAGAAAAAGTTCAAAAAGTCTTGTGGCTCAAGCTGGCCATCA
AGACCAACTTCCACAAGTGCCTTGTAGATGGTTTGATACATCATTTGCATGGTTTTGTGCTGCA
GAGGTTGTGAAAAATTCCGGTAAAAAGAAGGTGAGATCGGGTTGTTTTTAGCAAAGAATCAAAA
AATTATTTTACCTGCCAGTAGAGAATTCTTTGAATAGGATTACTTGTTGGAGCACCTTCTGGCC
ACATTGGAATGACAATATAAGCAGCAAACTTTTCCCTTGCTCTAATTTTGTTAGCAATCTTCAG
CGCGATTTCCATCGGGATTAGATTATTCGCACCTGCAATGCCAAAACTCCTTGTTTACATATTG
TACGCATCGATTACTAAGCTTTCCTTCAAAAGCTTTAAAGTTTCTTACCCAAGTTCTTGTTTGA
ATCCCAATTGAATGATGATCCAAGAAAATATTGGTTTTCAATGTAAATGAAGTGCTGAGCAGAT
CGTATGGCTTTAACATAAGCTGCATGTATGCTCATATCTATGAGAATGTTCTTCCCACATAGAA
GGTTCTGTTCATGAATACATAATCAGTCGGAGATAGCAACATGATGACAAACAAAAACAGCTCA
GAGTTGTGGTGCTATCTTACTCTTCCAGTAGCTTCCTTTGGGTCCTTTGGAAACCCTTTAACTG
AACTCGAATCAATTGAACGGAAAACCTAAAGATTAATATCATTGGAGAAAAAATGAGATTCTTT
TTGTCACCACCACAAATAACAATAACTAGCAAAAAAATTAGACTTGCTAAATTACCTGAACATG
CCAAGACTCTGGATCATTATCATTAGCAGAAGAAGCTTCGGAAAGTCCCATTATGTCAGGAATT
CTGTCTAACCTAAGCAAAGAATCATCAGAAGAAGTTCTTAGTCTCCCAATTCCGCGAGGTTTTG
AAGCCTTCATCCAGCGTTCCTCAAAATTAGCAAGCACATCATATGCAGCTGGACCATCAATCTT
GCTGTGCAGATCATGCCATGGTTCTCTTGGTCCATCATCCGCAGTAGTCTAATAAGAAAAACAG
AATTTACATGGATCAAGAATAGCGGATTCTAATTCCAAAATTGCAACCAAGCAGGTTTTTTCTT
AAATGATTACCACAAAATTTGGGTTATGGAAGTCATCTTTATGGATTGTCTTTAATGTCCTGAA
GAGAGGATGCTTGGGAGTATCAAATCGTCCGTTGCACAAGTCTAGCCCTCCAACAAATGCTACA
ATCTTTCTTCGGTTCTGAGCTGCTTCAGCATCTACAATCATAGTTTTCTGATGATGCGTGTAGA
TTGTTTCAACTTCCTGATCATCATAATGACACTCAAATTTTAGACGCTGAAGCTATACACACAA
GAGTTTACACAGTAATGAAGTAACTAATGAGCATCTTACAGATTTTTTTATGAAGCTGTGACCT
TTCCCTCCATATCTAGGACAAAGGAGAACTTGCACCGATGAGTGCTTGAAAAAACGGCGAGTCT
CCTCATCGCTTGTGTTCATAAGTCCTTT
Conservation Information
Conserved circRNAs NA
PMCS 0.610247857
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017