Detail information of 4_circ_ag.2


General Information
CircRNA Name 4_circ_ag.2
ID in PlantcircBase ath_circ_030465
Alias At_ciR377
Organism Arabidpsis thaliana
Position chr4: 7126847-7131697  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 4_circ_ag.8 4_circ_ag.9 AT4G11830_circ_g.1 4_circ_ag.2 4_circ_ag.3 4_circ_ag.4 4_circ_ag.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 4_circ_ag.9 4_circ_ag.10 4_circ_ag.11 4_circ_ag.12 4_circ_ag.13 4_circ_ag.14 4_circ_ag.15 4_circ_ag.16 4_circ_ag.17 4_circ_ag.18 4_circ_ag.19 4_circ_ag.20 4_circ_ag.21 4_circ_ag.22 4_circ_ag.23 4_circ_ag.24 4_circ_ag.25 4_circ_ag.26 4_circ_ag.27 4_circ_ag.28 AT4G11840_circ_g.1 4_circ_ag.2 4_circ_ag.3 4_circ_ag.4 4_circ_ag.5 4_circ_ag.6 AT4G11845_circ_g.1 AT4G11845_circ_g.3 AT4G11850_circ_g.1 AT4G11850_circ_g.2
Support reads 8/2
Tissues leaf/inflorescences
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGACCTTTCCCTCCAGATCTGGGACAAAGGAGAACTTGCACCGACGAATGCTTGAAAAAACG
GCGAGTCTCCTCATCGCTTGTGTTCATAACTCCTTGctgagtgtagcaatcgattgcggttgta
aaatctttggatcggaaagctaagtccccttgcttctttgaaaagagagattcctgcatctggg
ttgtccac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAGTGTAGCAATCGATTGCGGTTGTAAAATCTTTGGATCGGAAAGCTAAGTCCCCTTGCTTC
TTTGAAAAGAGAGATTCCTGCATCTGGGTTGTCCACATTTGAAACGAGAGCTGCAGAAGAAGGT
AAATAAAATCATATTCAAAACAAGTCCCTAATGCAAAAGACTAAGTAGTAAGCGAGAGGAAGGA
ATAGATTAACACCTCAATGGCAATTCCTTGTATCCAATCTTACTAAGTATTTCCTGTATGGCTG
TAAGATCCATTCTTAAGCAGTATTTCCTGTATGGCTGTAAGATTCACTCTTAAGCATGCATCAT
CACCAAAGGATGTCTGAGAAAGAATGAGGCAGGAAAAACGATGATGATCATCATTTAGATTTTA
GTAAGGACTGAACTAGAGATTCCTTCCAAGAACTATCCAGCAAGAAACAAAGAGCCAGGTCCTA
CATTACATCTAAAGTTTATATATCTTCTATTAGTAGAGAACTTACATGGCTCGGTGGAATATGT
TTTCCACTAATGAGATCGAGCAAAACGGTTCCAAAACTGAAAACATAATACACTCTCTGGTGTA
ACTCTACCTGACACAAGATGAAGAAAGTGGATTTAGCTTTGGGAACTTTGTGCCCTGAAATATT
TTGGACATATATAAACATGAAGCAGAGAGAGTTTTACCCGTTAGCAAATTTCTCTGTAGGAGTA
AATGCCAAGTTAGTGCTATATAACTCTTCCCATCTCTGCTACTTTTCATGAGTCCAAAGCAAGA
CAACCTGGGATTCCCATCCTAAAAACCGATGAAAGATAAACAAAATTTTACGACTTCAAATACA
GATCACTCAGAGAGATAAAGAAACATTGAATCAATATATTCACCAAAATAAATGCCAGCATTAC
AGAGCTTGATTAAGTAAGGTTCATGCTTAAGCAGGAAAAGGAGAACGTTCAAACACAAACCATC
ACCCAAATCTATCGTTAACTACCAGACTCACTAAAATTAATTCCAATTGACAAGATCTAAGAAA
ACCCAGTTTCGAAATTTGATGGTTTCAATTCCAATCATCAATCTCGGCTAAAAGGAACTGAAAA
AAATGAAAACAGAGAGATACGTACCATGGGAAATAGATTGGAGCATACTCTCCGATTTGAAATC
GTCGAGGGTCTCCACCGACGTTGAAATGAATATAACGACAGATCGGATCCGACGCATATCTCCT
CATAATTCATCGGATCGAGTGATTTCGCGTTGAAGGTCGACAAAAAGAGAGAGACGATGAAATG
GGGAAACAAACAAAATTTGTCACGTGAGTACTTTTTTTTTTGGGTTTTGTCATTATAATCCCAC
CAATGGTGTATCGACACGTCATCGCCTCTTAACATACCAAATAACTCTAACCTAAAGACACACA
CACCTGGTTGCACACAAAAAAAAAAAGACACACACTTCTTAGTTCTTATAAAGGAACAAAACTT
GTAAATAGGGATATATGTCATGACCAAAAAGATATTGTATAAAAGATAATTTTTATTCAATTTT
TTTTTTTTTTTTTTTGATCTGTTGATTTAGGTTGGAATGCAGAATTGTGGTGAATTCAACACCA
TCTCTCAAATCTTTTAGAGATAATATAGATAGATCAGAGAAGATAGAAAGGAAAAAAGATGGTG
TGACGCGTTGAATGCTCCATGGCCACTGCAAGAAAATGTAATAACACTTTCAGAAAATGGGGAT
GTAAGTAAAAAAAATTCGGAAAAATGTCTGCAAACTTATGAATCTACTCATGATCAAATGGAAG
AAGAAAATCTCAAGAATCTTGACATTATTATCATTTGCTGACAAATTGCATAGAGAAGAGCAAG
TCAACAAATCCTTATCTGCTTCCCTATTCTAATAATTGTATTGAGTTTTTCCTGTCTGACTTGT
TGCAACTCCTTGGCTCCAACAAGTTACGAGGGAAAACATAGCGAACTCCTTCCAGTAGTTACTA
CTTAAACTAAGCTATGACTCTCTTCCTCCTCAACTTAAGCGATGCTTTGACCTCTGCTCAGTAT
TCCCCAAGGGCCATGTTTTCGATAGGGAGGAATTATTGCAGTAGACCTCTTATACCAACCAAGG
AGCAGCAGAAGATTGGAAATGATTACCTGGTGATTTAGTTTGCTCAATCTTTTTTTTCATGACA
AGCTTTGTGATGCATGATCTTATGAATGATTTAGCAAAAGCTGTTTCAGGATGACATTTTTCAT
TTTCTACAAGCCAATGTGATATTGTAATCATATAGTACTAAAGATATGACAACATTACTAAATT
AAATCATATAGTAAAAATCCAAAACACACACTTTGATAGATCAATTGAAATTTTGTAATAAATA
GATTTACAGCTCATAAATTTGAAAAGCACAACTAGACCCTAAAGGCACACTTTCAATCAGATCA
CACTGAGAGAGATTTCTTGAAGTGGAAGAAATAAAGAACAAATGTTGATCACTACAAGCCTACA
AGGTAAGTTTCATATGGTGAGGTTTTCTTGTAGTGCAAGGAACGATCCTATGATCTTGCCACCC
AGATCTGGGAATGTCTCGCATCCAGGAAGAGAACTCACTTTGCCTGTTCTATCAACTTGAACTG
GATACTTAAGAAGATGACCTGACATCTCTGTGACTTCCTCTGCTGCATACTGTCTCCAATTCAG
CTCACTCAATTGCCTTACTCGTCTCACGCATTCCATGTTCTCTGGTTCCTCGAAACCTTGCTCT
AGAAACCCTAGATGTTCTGCCCATAACGACATTCTATACCCAAAGATCTGCAAGAAATTGGGAC
AAACCAGGGTTCAGACATGTTTAAGAGAACATACATTGGTGGGTTGCTAGTTTTTCGTCTTAGA
ATGCTGTCCTAGATTGAAAAGTAGAAGTATTTGAAAGTCTTATTTACCTGACCATGAGGACGAG
AACCTTTCATAGCCCATGAATAGTGTGGCTGATACCCTCCCATGGCGATTTCAGTATCTCTAGT
TCCTTCCAAGGATCTCTGGTTGATATTCGCGGAACCAATTAAGACAAACTCATCATCCACTACC
ATACCTTTGGAATGAACATATATCATGAATCTTCGACTCTTCAAAGCTTGTACCTAGATTAGTT
TGTTGTTTCAGTGAGTTAACGAGGCCATTATGGTGAAACTCAAGATTTTAAAAAGAAGAAATTT
ATATATGTATACCTGTGCAGCATTTGCATTTGCGTTTGGCTGAGGTGGCTTCCGAGGACTATTA
TATACGCTAACTGTTCCAACAGGAACTTCTCTGGTTCCAAGACAGAAAAAGTTCAAAAAGTCTT
GTGGCTCAAACTGGCTATCAAGACCAACTTCCACAAGTGCCTTGTAGATGGTTTGATACATCAT
TTGCATTGTCTTGTGCTGCAGAGATTATGAAAAGATTTCCGGTATGAAGACGGCAAGATAGGGT
TGTTTTAGCAAAAAATTGACAAATTATTTACCTGCCAGTAGAGAATTCTTTGAATAGGGTTACT
TGTTGGAGCACCTTCTGGCCACATTGGAATGACAATATAAGCAGCAAACTTCTCCCTTGCTCTA
ATTTTGTTAGCAATCTTAAGCGCGATTTCCATCGGGATTAGATTATTAGCACCTGCAATGCCAA
AACTCCTTGTTATTACTGCACGCATTGATTACTGAGCTTGCCTTTAAAAGCTTTCAATTTTCTT
ACCCAAGTCCTTGTTTGAATCCCAGTTGAATGAAGATCCAAGAAAATATTGGTTCTCAATGTAA
ATGAAGTGCTGAGCAGATCGTATGGCCTTAACATAAGCTGCGTGTATGCTCATATCTATGAGAA
TATTCTTCCCACATAGAAGATTCTGTTCACAAATACAGTTTGTCAGCAGAGAATAGCAACATGA
TGACAAACTAAAACAGTTCACAGTTGTTCTTACTCTTCCAGTAGCTTCCTTTGGGTCCTTTGGA
AACCCTTTGACTGAACTTGAATCAATGGAACGGAAAACCTAAAGATTAATATCATTGCAACAAA
AATTAGATTCCTTTTGTAACCACCACAAATAAAAATAATGCTTCATGAGTTATCAATGATAATT
AGTCTTGCTAAATTACCTGAACATGCCAAGACTCTGGATCATTATCATTAGCAGAAGAAGCTTC
AGAAAGTCCCACGATGTCAGGAATTCTGTCTATCCTAAGCAAAGAATCATCAGAAGAAGATTTT
AGTTTCCCAATTCCGCGAGGTTTTGAAGCCTTCATCCAGCGTTCCTCGAAATTAGCAAGTACAT
CATATGCAGCTGGACCATCAATCTTGCTGTGAAGATCATGCCATGGTTCTCTTGGTCCATCATC
CGCAGTAGTCTAATAAGAAAAACAGATTTTACATGGATCAAGAATAGCGATTTTAATTCCAAAA
CTGCAACCAAGGAGGATTTTTCTTAAATGGTTACCACAAAATTTGGGTTGTGGAAGTCATCTTT
ATGGAGTGTCTTTAATGTCCTGAAGAGAGGATGCTTGGGAGTATCAAATCGTCCGTTGCACAAA
TCTAGCCCTCCAACAAATGCTACGATCTTTCTTCGGTTCTGAGCTGCTTCAGCGTCTACAATCA
CAGTTTTTTGATGATGCGTGTAGATTGTTCCAACTTCCTGATCATCATAATGACACTCAAATTT
CAGATGATGAAACTATACACACGGGAGTTTAAGCAGTAAGCAGTAACTAATGAGCATCTTACAG
ATTTTTTTATGAAGCTGTGACCTTTCCCTCCAGATCTGGGACAAAGGAGAACTTGCACCGACGA
ATGCTTGAAAAAACGGCGAGTCTCCTCATCGCTTGTGTTCATAACTCCTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.454184203
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017