Detail information of BGIOSGA015041_circ_g.1


General Information
CircRNA Name BGIOSGA015041_circ_g.1
ID in PlantcircBase osi_circ_014394
Alias Chr04:22349583_22352588(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 19898105-19901110  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA015041
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015041_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA015041-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGACCTTTCATTATAGTTCCTTGACGAGCATCTTTCTTCGTGTTTGACTTGGGGACCTGTTGCG
ATGGTGCATATTCCACAAGAGCTTTAAATTGAGCACccatctgcttgctgacagaaattttcac
cagaatgttgctgcattggtgagaactcagatgacgaggaatgcgtcccacctgatgcagattt
gtcatagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATCTGCTTGCTGACAGAAATTTTCACCAGAATGTTGCTGCATTGGTGAGAACTCAGATGACG
AGGAATGCGTCCCACCTGATGCAGATTTGTCATAGCGACGAGGGGCCCATACACCACGATCAGG
CCTATCTCTATTTCTAGCATGTCTTTCAGTCTTTTCACTGATGAGCCCAGAACCATGGAGATGA
CTATGTTTGTCATCCAAATGGTTTTTCTCAGCATTTTCAACTACCTGATCTTTAACAACGGAAC
GTGGGTTTGGAATCCGTGGTGGGCGCTTCTCAGCTGTAATTATGTGACCTTCCTGATCATGTTG
AGACGTAACCACATGCCGTCCTTCCTTGTTTGAAAGTATAGTCTTAATAATTCTGCCACTGCCC
TCAAGCCGCGGATCTTGCCTAGAACTAGATTGTGCAGCATTTTTCATAGGGGTCCCTGACTGCT
GCTGAGATGTGACATCAGATGTCTGGAAAAAACATATCAAATGACAGTCAGTACAGTTACCAAC
AAAATGGTCAAACTATTCGTGGAGCTTATATACTTACATTAGAATCGACCCTTGCTCTTCCTTT
CAAAAGCACAATTTTCTCTTTTTTGTTTTCCGCGACATGAGCAGAACCAGAAATCCCGCCACTT
GTAGCATCTACGAGACAATTGAACGAAACAGCAATATTAACAACTAAAAAGGAACTTTCATCAA
GACATATGGGCAGAAAGTGCAAAAATAGCATACATCAACAATTTACAAATTGGAAGGATAGAGG
CTAACAGAAGACGACAAGAATAATACTATACACTTCTTGGAAAGGTAACTGACTAATAGAACTC
CATGCAAAGACAAAATGATGGAAGTTCAAAATGAAATCCATTTTCTATAGGATAGGACATTGAC
GTAGTGTAGCAAAAGTAGATGTCACCCAACAAGGTACGCCATTGCCATAATTGGATGGCAGGTA
GCCATACAAATGTCCACAGGCCTATCTCAACACAATAGCTATTATGCCAAATAAGTAAACAAGC
CCAAACTAAACTTGTCTATGTTGATGGTGCTTTTAGCATTGCAGTGGTTTTAGTTTTTGTTTTG
GAATAGTCATAAAAACAACTAAGATTTAACCTATTTACTTAAATTGTACAGGTTTCATATAGCT
AGATTTCACCATGCAACACAGCATAATAAGATCAACTTGATCTTGCCTCAGTTCTCACAGAATT
GAATCAATCAGTGTCATCACCCTATTACCTAACTCAGCTCAAACTATACATTAGTTGATACAAC
CTTTTATCAGCATATATAGGCATGGATATGTTATAGCAGAGAACAGATACTTAGTAATAATCAA
TAAAATAAAAGGACATGTTGATATGAATGGTTACAACAAAGTTATAGTGATTATCTATTTCTTG
AATCAGTACCACCTGAAGTTCCAGCAGTACCTTTTTCCCTCTGCGCATGCTCGTCTCTCTTTGG
CACTAAGATATAAGTTGGCTTCTCCTTAGCATTCTCTCGTAGAACATATTGCTGAAGATCACAT
GAAAAAAAGACAAAAACAGTAGCTTGTCATAACCTCATGGCATAGTTTTTGTGCGGAATGAACT
GGGTACTTTTTATAACAATGCAGCATGAAACCCAAAATAACCAAACTGAGACACAGTGCACTGT
TCAAAGGTTGAAAAAGAATAGATGAAAACTCACAACAATAGCCCAGAAATAAAATATACTCCCT
GCATTTCATATTATAAGTTGTTTAACTTTTTCCTTAGTCAAACTTCTTTAGAAAAATATAATGA
GATTTTTAACACAAAACAAACATATTATCAAAATATATTCAATGCTAGATTTAATGAATCTAAT
TTGATATTTTAGATGTTAAATTTTTCTATAAACTTGGTCAAACTTAACAAAGTTTGACTAGGAA
AAAAGTCAAAACGACTTATAAGATGAAACAGAGGGAGTATAAAACATATAAGAGCATACAATAC
ACAAACAGTAGCACAAACAGAAATGCACACTGGGGACAGGATTTTGTTTTGAACAAAGAAAACA
TGACATAGGTCGATAGTACAAACAAACTGAAATTAGGGCGAACACCATGGCGAGAAAGGGCAAT
AAATATTAAAAGAAATAAAAAGAACCTATCGGGAAATAAAATAGATGGGTCCCGCCTCTTGTGA
CCATTTAAAATAGTAGTATTTCGTGAAGAAAACATGACATAGGATATGTTCATTTCATGAAATC
CAAGACCAGACTATGAAAATATATGCATGAAAAAATGAAGCCCCACCTCTTGTGGCCATTTAAA
ATTGTACTATTTTTTTCAAGCAAGAAATTTACCGTCGAAGCAGAGGTCCTGCGCTTCTCAGAAC
CCCTTTTAGAAGGACTAGGACTGCTAGTAACAACACCCGCAACTTTTCTACTGAGTCTACTACT
TCCAGATCTCTGTAACATGTGGAAGTACTAGTTAGCCGACCCTCAAGTTGATAAAATATAATAT
AAACCAATACTACAGTTTAATGAACACGTATACCTGAGCCATACTCTTAGCTGCCCTTTGCTGG
CGAACATAGACCATAAGAGGCGTCACAACAGGTGGTTCCTTTCCAGCAGCTGCAATAGTGATCA
AGTTGATAATAGACCCTTCTTTTATGCTTGGCATCTTTGAAAGGCATAATTATAATCTGATATT
ACAAACAATACTTTACCTGCCCTTTCAGCTTCTTTCCTTTCGAGCTGAATTTCAGCACTTGGCA
GATGCTCAGCAGGCTTTGAAATCGATTCAAGAAACTCCAAGTATTCCGGATCTGGATATTAAAT
CCCAAAAAAGATGCCAGCTAAGTTTGAAGTAATGATAAATATGAAATTGTGTCACCTACAGGAT
GGAGAATGAGATTAAATGATTGTCTAGGACCTTTCATTATAGTTCCTTGACGAGCATCTTTCTT
CGTGTTTGACTTGGGGACCTGTTGCGATGGTGCATATTCCACAAGAGCTTTAAATTGAGCAC
Conservation Information
Conserved circRNAs osa_circ_023925
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021