Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os04g0440100_circ_g.2 |
| ID in PlantcircBase | osa_circ_023925 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr4: 21899066-21902070 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os04g0440100 |
| Parent gene annotation |
Similar to H0525C06.10 protein. (Os04t0440100-01);Similar to H05 25C06.10 protein. (Os04t0440100-02) |
| Parent gene strand | - |
| Alternative splicing | Os04g0440100_circ_g.3 |
| Support reads | 1 |
| Tissues | shoot |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os04t0440100-02:7 Os04t0440100-01:7 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | osi_circ_014394 |
| PMCS | 0.12229437 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
21899292-21901983(-) 21901983-21899068(-) |
| Potential amino acid sequence |
MLRKTIWMTNIVISMVLGSSVKRLKDMLEIEIGLIVVYGPLVAMTNLHQVGRIPRHLSSHQCSN ILVKISVSKQMVLNLKLLWNMHHRNRSPSQTRRKMLVKEL*(-) MKDPEYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQRS GSSRLSRKVAGVVTSSPSPSKRGSEKRRTSASTQYVLRENAKEKPTYILVPKRDEHAQREKDAT SGGISGSAHVAENKKEKIVLLKGRARVDSNTSDVTSQQQSGTPMKNAAQSSSRQDPRLEGSGRI IKTILSNKEGRHVVTSQHDQEGHIITAEKRPPRIPNPRSVVKDQVVENAEKNHLDDKHSHLHGS GLISEKTERHARNRDRPDRGVWAPRRYDKSASGGTHSSSSEFSPMQQHSGENFCQQADGAQFKA LVEYAPSQQVPKSNTKKDARQGTIMKDPEYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKE PPVVTPLMVYVRQQRAAKSMAQRSGSSRLSRKVAGVVTSSPSPSKRGSEKRRTSASTQYVLREN AKEKPTYILVPKRDEHAQREKDATSGGISGSAHVAENKKEKIVLLKGRARVDSNTSDVTSQQQS GTPMKNAAQSSSRQDPRLEGSGRIIKTILSNKEGRHVVTSQHDQEGHIITAEKRPPRIPNPRSV VKDQVVENAEKNHLDDKHSHLHGSGLISEKTERHARNRDRPDRGVWAPRRYDKSASGGTHSSSS EFSPMQQHSGENFCQQADGAQFKALVEYAPSQQVPKSNTKKDARQGTIMKDPEYLEFLESISKP AEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQRSGSSRLSRKVAGVVTSS PSPSKRGSEKRRTSASTQYVLRENAKEKPTYILVPKRDEHAQREKDATSGGISGSAHVAENKKE KIVLLKGRARVDSNTSDVTSQQQSGTPMKNAAQSSSRQDPRLEGSGRIIKTILSNKEGRHVVTS QHDQEGHIITAEKRPPRIPNPRSVVKDQVVENAEKNHLDDKHSHLHGSGLISEKTERHARNRDR PDRGVWAPRRYDKSASGGTHSSSSEFSPMQQHSGENFCQQADGAQFKALVEYAPSQQVPKSNTK KDARQGTIMKDPEYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRA AKSMAQRSGSSRLSRKVAGVVTSSPSPSKRGSEKRRTSASTQYVLRENAKEKPTYILVPKRDEH AQREKDATSGGISGSAHVAENKKEKIVLLKGRARVDSNTSDVTSQQQSGTPMKNAAQSSSRQDP RLEGSGRIIKTILSNKEGRHVVTSQHDQEGHIITAEKRPPRIPNPRSVVKDQVVENAEKNHLDD KHSHLHGSGLISEKTERHARNRDRPDRGVWAPRRYDKSASGGTHSSSSEFSPMQQHSGENFCQQ AD(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |