Detail information of Os04g0440100_circ_g.2


General Information
CircRNA Name Os04g0440100_circ_g.2
ID in PlantcircBase osa_circ_023925
Alias NA
Organism Oryza sativa
Position chr4: 21899066-21902070  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0440100
Parent gene annotation Similar to H0525C06.10 protein. (Os04t0440100-01);Similar to H05
25C06.10 protein. (Os04t0440100-02)
Parent gene strand -
Alternative splicing Os04g0440100_circ_g.3
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0440100-02:7
Os04t0440100-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGACCTTTCATTATAGTTCCTTGACGAGCATCTTTCTTCGTGTTTGACTTGGGGACCTGTTGCG
ATGGTGCATATTCCACAAGAGCTTTAAATTGAGCACcatctgcttgctgacagaaattttcacc
agaatgttgctgcattggtgagaactcagatgacgaggaatgcgtcccacctgatgcagatttg
tcatagcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATCTGCTTGCTGACAGAAATTTTCACCAGAATGTTGCTGCATTGGTGAGAACTCAGATGACGA
GGAATGCGTCCCACCTGATGCAGATTTGTCATAGCGACGAGGGGCCCATACACCACGATCAGGC
CTATCTCTATTTCTAGCATGTCTTTCAGTCTTTTCACTGATGAGCCCAGAACCATGGAGATGAC
TATGTTTGTCATCCAAATGGTTTTTCTCAGCATTTTCAACTACCTGATCTTTAACAACGGAACG
TGGGTTTGGAATCCGTGGTGGGCGCTTCTCAGCTGTAATTATGTGACCTTCCTGATCATGTTGA
GACGTAACCACATGCCGTCCTTCCTTGTTTGAAAGTATAGTCTTAATAATTCTGCCACTGCCCT
CAAGCCGCGGATCTTGCCTAGAACTAGATTGTGCAGCATTTTTCATAGGGGTCCCTGACTGCTG
CTGAGATGTGACATCAGATGTCTGGAAAAAACATATCAAATGACAGTCAGTACAGTTACCAACA
AAATGGTCAAACTATTCGTGGAGCTTATATACTTACATTAGAATCGACCCTTGCTCTTCCTTTC
AAAAGCACAATTTTCTCTTTTTTGTTTTCCGCGACATGAGCAGAACCAGAAATCCCGCCACTTG
TAGCATCTACGAGACAATTGAACGAAACAGCAATATTAACAACTAAAAAGGAACTTTCATCAAG
ACATATGGGCAGAAAGTGCAAAAATAGCATACATCAACAATTTACAAATTGGAAGGATAGAGGC
TAACAGAAGACGACAAGAATAATACTATACACTTCTTGGAAAGGTAACTGACTAATAGAACTCC
ATGCAAAGACAAAATGATGGAAGTTCAAAATGAAATCCATTTTCTATAGGATAGGACATTGACG
TAGTGTAGCAAAAGTAGATGTCACCCAACAAGGTACGCCATTGCCATAATTGGATGGCAGGTAG
CCATACAAATGTCCACAGGCCTATCTCAACACAATAGCTATTATGCCAAATAAGTAAACAAGCC
CAAACTAAACTTGTCTATGTTGATGGTGCTTTTAGCATTGCAGTGGTTTTAGTTTTTGTTTTGG
AATAGTCATAAAAACAACTAAGATTTAACCTATTTACTTAAATTGTACAGGTTTCATATAGCTA
GATTTCACCATGCAACACAGCATAATAAGATCAACTTGATCTTGCCTCAGTTCTCACAGAATTG
AATCAATCAGTGTCATCACCCTATTACCTAACTCAGCTCAAACTATACATTAGTTGATACAACC
TTTTATCAGCATATATAGGCATGGATATGTTATAGCAGAGAACAGATACTTAGTAATAATCAAT
AAAATAAAAGGACATGTTGATATGAATGGTTACAACAAAGTTATAGTGATTATCTATTTCTTGA
ATCAGTACCACCTGAAGTTCCAGCAGTACCTTTTTCCCTCTGCGCATGCTCGTCTCTCTTTGGC
ACTAAGATATAAGTTGGCTTCTCCTTAGCATTCTCTCGTAGAACATATTGCTGAAGATCACATG
AAAAAAAGACAAAAACAGTAGCTTGTCATAACCTCATGGCATAGTTTTTGTGCGGAATGAACTG
GGTACTTTTTATAACAATGCAGCATGAAACCCAAAATAACCAAACTGAGACACAGTGCACTGTT
CAAAGGTTGAAAAAGAATAGATGAAAACTCACAACAATAGCCCAGAAATAAAATATACTCCCTG
CATTTCATATTATAAGTTGTTTAACTTTTTCCTTAGTCAAACTTCTTTAGAAAAATATAATGAT
ATTTTTAACACAAAACAAACATATTATCAAAATATATTCAATGCTAGATTTAATGAATCTAATT
TGATATTTTAGATGTTAAATTTTTCTATAAACTTGGTCAAACTTAACAAAGTTTGACTAGGAAA
AAAGTCAAAACGACTTATAAGATGAAACAGAGGGAGTATAAAACATATAAGAGCATACAATACA
CAAACAGTAGCACAAACAGAAATGCACACTGGGGACAGGATTTTGTTTTGAACAAAGAAAACAT
GACATAGGTCGATAGTACAAACAAACTGAAATTAGGGCGAACACCATGGCGAGAAAGGGCAATA
AATATTAAAAGAAATAAAAAGAACCTATCGGGAAATAAAATAGATGGGTCCCGCCTCTTGTGAC
CATTTAAAATAGTAGTATTTCGTGAAGAAAACATGACATAGGATATGTTCATTTCATGAAATCC
AAGACCAGACTATGAAAATATATGCATGAAAAAATGAAGCCCCACCTCTTGTGGCCATTTAAAA
TTGTACTATTTTTTTCAAGCAAGAAATTTACCGTCGAAGCAGAGGTCCTGCGCTTCTCAGAACC
CCTTTTAGAAGGACTAGGACTGCTAGTAACAACACCCGCAACTTTTCTACTGAGTCTACTACTT
CCAGATCTCTGTAACATGTGGAAGTACTAGTTAGCCGACCCTCAAGTTGATAAAATATAATATA
AACCAATACTACAGTTTAATGAACACGTATACCTGAGCCATACTCTTAGCTGCCCTTTGCTGGC
GAACATAGACCATAAGAGGCGTCACAACAGGTGGTTCCTTTCCAGCAGCTGCAATAGTGATCAA
GTTGATAATAGACCCTTCTTTTATGCTTGGCATCTTTGAAAGGCATAATTATAATCTGATATTA
CAAACAATACTTTACCTGCCCTTTCAGCTTCTTTCCTTTCGAGCTGAATTTCAGCACTTGGCAG
ATGCTCAGCAGGCTTTGAAATCGATTCAAGAAACTCCAAGTATTCCGGATCTGGATATTAAATC
CCAAAAAAGATGCCAGCTAAGTTTGAAGTAATGATAAATATGAAATTGTGTCACCTACAGGATG
GAGAATGAGATTAAATGATTGTCTAGGACCTTTCATTATAGTTCCTTGACGAGCATCTTTCTTC
GTGTTTGACTTGGGGACCTGTTGCGATGGTGCATATTCCACAAGAGCTTTAAATTGAGCAC
Conservation Information
Conserved circRNAs osi_circ_014394
PMCS 0.12229437
Functional Information
Coding potential Y
Potential coding position 21899292-21901983(-)
21901983-21899068(-)
Potential amino acid sequence MLRKTIWMTNIVISMVLGSSVKRLKDMLEIEIGLIVVYGPLVAMTNLHQVGRIPRHLSSHQCSN
ILVKISVSKQMVLNLKLLWNMHHRNRSPSQTRRKMLVKEL*(-)
MKDPEYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQRS
GSSRLSRKVAGVVTSSPSPSKRGSEKRRTSASTQYVLRENAKEKPTYILVPKRDEHAQREKDAT
SGGISGSAHVAENKKEKIVLLKGRARVDSNTSDVTSQQQSGTPMKNAAQSSSRQDPRLEGSGRI
IKTILSNKEGRHVVTSQHDQEGHIITAEKRPPRIPNPRSVVKDQVVENAEKNHLDDKHSHLHGS
GLISEKTERHARNRDRPDRGVWAPRRYDKSASGGTHSSSSEFSPMQQHSGENFCQQADGAQFKA
LVEYAPSQQVPKSNTKKDARQGTIMKDPEYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKE
PPVVTPLMVYVRQQRAAKSMAQRSGSSRLSRKVAGVVTSSPSPSKRGSEKRRTSASTQYVLREN
AKEKPTYILVPKRDEHAQREKDATSGGISGSAHVAENKKEKIVLLKGRARVDSNTSDVTSQQQS
GTPMKNAAQSSSRQDPRLEGSGRIIKTILSNKEGRHVVTSQHDQEGHIITAEKRPPRIPNPRSV
VKDQVVENAEKNHLDDKHSHLHGSGLISEKTERHARNRDRPDRGVWAPRRYDKSASGGTHSSSS
EFSPMQQHSGENFCQQADGAQFKALVEYAPSQQVPKSNTKKDARQGTIMKDPEYLEFLESISKP
AEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQRSGSSRLSRKVAGVVTSS
PSPSKRGSEKRRTSASTQYVLRENAKEKPTYILVPKRDEHAQREKDATSGGISGSAHVAENKKE
KIVLLKGRARVDSNTSDVTSQQQSGTPMKNAAQSSSRQDPRLEGSGRIIKTILSNKEGRHVVTS
QHDQEGHIITAEKRPPRIPNPRSVVKDQVVENAEKNHLDDKHSHLHGSGLISEKTERHARNRDR
PDRGVWAPRRYDKSASGGTHSSSSEFSPMQQHSGENFCQQADGAQFKALVEYAPSQQVPKSNTK
KDARQGTIMKDPEYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRA
AKSMAQRSGSSRLSRKVAGVVTSSPSPSKRGSEKRRTSASTQYVLRENAKEKPTYILVPKRDEH
AQREKDATSGGISGSAHVAENKKEKIVLLKGRARVDSNTSDVTSQQQSGTPMKNAAQSSSRQDP
RLEGSGRIIKTILSNKEGRHVVTSQHDQEGHIITAEKRPPRIPNPRSVVKDQVVENAEKNHLDD
KHSHLHGSGLISEKTERHARNRDRPDRGVWAPRRYDKSASGGTHSSSSEFSPMQQHSGENFCQQ
AD(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017