Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0440100_circ_g.2 |
ID in PlantcircBase | osa_circ_023925 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 21899066-21902070 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0440100 |
Parent gene annotation |
Similar to H0525C06.10 protein. (Os04t0440100-01);Similar to H05 25C06.10 protein. (Os04t0440100-02) |
Parent gene strand | - |
Alternative splicing | Os04g0440100_circ_g.3 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0440100-02:7 Os04t0440100-01:7 |
Conservation Information | |
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Conserved circRNAs | osi_circ_014394 |
PMCS | 0.12229437 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
21899292-21901983(-) 21901983-21899068(-) |
Potential amino acid sequence |
MLRKTIWMTNIVISMVLGSSVKRLKDMLEIEIGLIVVYGPLVAMTNLHQVGRIPRHLSSHQCSN ILVKISVSKQMVLNLKLLWNMHHRNRSPSQTRRKMLVKEL*(-) MKDPEYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQRS GSSRLSRKVAGVVTSSPSPSKRGSEKRRTSASTQYVLRENAKEKPTYILVPKRDEHAQREKDAT SGGISGSAHVAENKKEKIVLLKGRARVDSNTSDVTSQQQSGTPMKNAAQSSSRQDPRLEGSGRI IKTILSNKEGRHVVTSQHDQEGHIITAEKRPPRIPNPRSVVKDQVVENAEKNHLDDKHSHLHGS GLISEKTERHARNRDRPDRGVWAPRRYDKSASGGTHSSSSEFSPMQQHSGENFCQQADGAQFKA LVEYAPSQQVPKSNTKKDARQGTIMKDPEYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKE PPVVTPLMVYVRQQRAAKSMAQRSGSSRLSRKVAGVVTSSPSPSKRGSEKRRTSASTQYVLREN AKEKPTYILVPKRDEHAQREKDATSGGISGSAHVAENKKEKIVLLKGRARVDSNTSDVTSQQQS GTPMKNAAQSSSRQDPRLEGSGRIIKTILSNKEGRHVVTSQHDQEGHIITAEKRPPRIPNPRSV VKDQVVENAEKNHLDDKHSHLHGSGLISEKTERHARNRDRPDRGVWAPRRYDKSASGGTHSSSS EFSPMQQHSGENFCQQADGAQFKALVEYAPSQQVPKSNTKKDARQGTIMKDPEYLEFLESISKP AEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQRSGSSRLSRKVAGVVTSS PSPSKRGSEKRRTSASTQYVLRENAKEKPTYILVPKRDEHAQREKDATSGGISGSAHVAENKKE KIVLLKGRARVDSNTSDVTSQQQSGTPMKNAAQSSSRQDPRLEGSGRIIKTILSNKEGRHVVTS QHDQEGHIITAEKRPPRIPNPRSVVKDQVVENAEKNHLDDKHSHLHGSGLISEKTERHARNRDR PDRGVWAPRRYDKSASGGTHSSSSEFSPMQQHSGENFCQQADGAQFKALVEYAPSQQVPKSNTK KDARQGTIMKDPEYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRA AKSMAQRSGSSRLSRKVAGVVTSSPSPSKRGSEKRRTSASTQYVLRENAKEKPTYILVPKRDEH AQREKDATSGGISGSAHVAENKKEKIVLLKGRARVDSNTSDVTSQQQSGTPMKNAAQSSSRQDP RLEGSGRIIKTILSNKEGRHVVTSQHDQEGHIITAEKRPPRIPNPRSVVKDQVVENAEKNHLDD KHSHLHGSGLISEKTERHARNRDRPDRGVWAPRRYDKSASGGTHSSSSEFSPMQQHSGENFCQQ AD(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |