Detail information of BGIOSGA015041_circ_g.2


General Information
CircRNA Name BGIOSGA015041_circ_g.2
ID in PlantcircBase osi_circ_005481
Alias 4:19899543|19899857
Organism Oryza sativa ssp. indica
Position chr4: 19899543-19899857  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA015041
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015041_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA015041-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGTGCACTGTTCAAAGGTTGAAAAAGAATAGATGAAAACTCACAACAATAGCCCAGAAATAAA
ATATACTCCCTGCATTTCATATTATAAGTTGTTTAActttttccctctgcgcatgctcgtctct
ctttggcactaagatataagttggcttctccttagcattctctcgtagaacatattgctgaaga
tcacatga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTTCCCTCTGCGCATGCTCGTCTCTCTTTGGCACTAAGATATAAGTTGGCTTCTCCTTAGC
ATTCTCTCGTAGAACATATTGCTGAAGATCACATGAAAAAAAGACAAAAACAGTAGCTTGTCAT
AACCTCATGGCATAGTTTTTGTGCGGAATGAACTGGGTACTTTTTATAACAATGCAGCATGAAA
CCCAAAATAACCAAACTGAGACACAGTGCACTGTTCAAAGGTTGAAAAAGAATAGATGAAAACT
CACAACAATAGCCCAGAAATAAAATATACTCCCTGCATTTCATATTATAAGTTGTTTAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021