Detail information of Os01g0118100_circ_g.3


General Information
CircRNA Name Os01g0118100_circ_g.3
ID in PlantcircBase osa_circ_000143
Alias Os01circ01116
Organism Oryza sativa
Position chr1: 1026722-1027333  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, SMALT, Segemehl
Parent gene Os01g0118100
Parent gene annotation Similar to Fructose-bisphosphate aldolase. (Os01t0118100-01)
Parent gene strand +
Alternative splicing Os01g0118100_circ_g.1 Os01g0118100_circ_g.2 Os01g0118100_circ_g.4 Os01g0118100_circ_g.5
Support reads 3/1
Tissues leaf/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0118100-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTTTTGGTGCTATTTTTAATTGCCTTGATCCCATATTAACCATTGTTTCGGGACTTAGTGTG
AGAGATCCATTCTTGACTCCATTTGACAAGAAGGATagacgaggaagagctggtcgagtccaac
caggggagtgttaccatctatatccacaatgcgtgtatgaagcatttgctgactatcagttgcc
agaactcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 423
Transcript exons: 1026722-1026925,1027012-1027081,1027185-1027333
AGACGAGGAAGAGCTGGTCGAGTCCAACCAGGGGAGTGTTACCATCTATATCCACAATGCGTGT
ATGAAGCATTTGCTGACTATCAGTTGCCAGAACTCCTGAGAACTCCTCTGCAATCCCTCTGTTT
GCAAATAAAAAGCTTGCGCCTTGGGAGCATCTCTGAATTTTTATCCAGAGCTTTGCAATCACCT
GAGTCTCTATCGGTAGAAAATGCCATTGAATATCTCAAAGTCATTGGAGCGTTTGATCGTAATG
AAGAGTTAACAATTCTAGGAAAGCACTTATCCATGCTTCCAGTTGAGCCTAAATTGGGGAAGAT
GCTGATTTTTGGTGCTATTTTTAATTGCCTTGATCCCATATTAACCATTGTTTCGGGACTTAGT
GTGAGAGATCCATTCTTGACTCCATTTGACAAGAAGGAT

Genomic sequence AGACGAGGAAGAGCTGGTCGAGTCCAACCAGGGGAGTGTTACCATCTATATCCACAATGCGTGT
ATGAAGCATTTGCTGACTATCAGTTGCCAGAACTCCTGAGAACTCCTCTGCAATCCCTCTGTTT
GCAAATAAAAAGCTTGCGCCTTGGGAGCATCTCTGAATTTTTATCCAGAGCTTTGCAATCACCT
GAGTCTCTATCGGTACTTGATTTCCGTATTAATCACAAGCCGCAAAAGTCTATCCTGTGTCTTG
GAATGACTTGATAAATTAATTTGAATTTTTTCAGGTAGAAAATGCCATTGAATATCTCAAAGTC
ATTGGAGCGTTTGATCGTAATGAAGAGTTAACAATTCTAGGTATCAGATCCATCCTTCAAATCA
TCCGTTTATCACTGCTTTATTGAATCATCTTGAGCATTTGTAGCATGTGCTAACTATACCCACG
GATTGGCATTACCAGGAAAGCACTTATCCATGCTTCCAGTTGAGCCTAAATTGGGGAAGATGCT
GATTTTTGGTGCTATTTTTAATTGCCTTGATCCCATATTAACCATTGTTTCGGGACTTAGTGTG
AGAGATCCATTCTTGACTCCATTTGACAAGAAGGAT
Conservation Information
Conserved circRNAs osi_circ_001770* osi_circ_008946
PMCS 0.480562977
Functional Information
Coding potential Y
Potential coding position 1027200-1027330(+)
1026768-1027273(-)
1026796-1027292(-)
Potential amino acid sequence MLPVEPKLGKMLIFGAIFNCLDPILTIVSGLSVRDPFLTPFDKKDRRGRAGRVQPGECYHLYPQ
CVYEAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRALQSPESLSVENAIEYLKVIGAFD
RNEELTILGKHLSMLPVEPKLGKMLIFGAIFNCLDPILTIVSGLSVRDPFLTPFDKKDRRGRAG
RVQPGECYHLYPQCVYEAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRALQSPESLSVE
NAIEYLKVIGAFDRNEELTILGKHLSMLPVEPKLGKMLIFGAIFNCLDPILTIVSGLSVRDPFL
TPFDKKDRRGRAGRVQPGECYHLYPQCVYEAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFL
SRALQSPESLSVENAIEYLKVIGAFDRNEELTILGKHLSMLPVEPKLGKMLIFGAIFNCLDPIL
TIVSGLSVRDPFLTPFDKKD(+)
MVTLPWLDSTSSSSSILLVKWSQEWISHTKSRNNG*(-)
MLHTRIVDIDGNTPLVGLDQLFLVYPSCQMESRMDLSH*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017