Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0118100_circ_g.3 |
ID in PlantcircBase | osa_circ_000143 |
Alias | Os01circ01116 |
Organism | Oryza sativa |
Position | chr1: 1026722-1027333 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, SMALT, Segemehl |
Parent gene | Os01g0118100 |
Parent gene annotation |
Similar to Fructose-bisphosphate aldolase. (Os01t0118100-01) |
Parent gene strand | + |
Alternative splicing | Os01g0118100_circ_g.1 Os01g0118100_circ_g.2 Os01g0118100_circ_g.4 Os01g0118100_circ_g.5 |
Support reads | 3/1 |
Tissues | leaf/root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os01t0118100-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_001770* osi_circ_008946 |
PMCS | 0.480562977 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1027200-1027330(+) 1026768-1027273(-) 1026796-1027292(-) |
Potential amino acid sequence |
MLPVEPKLGKMLIFGAIFNCLDPILTIVSGLSVRDPFLTPFDKKDRRGRAGRVQPGECYHLYPQ CVYEAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRALQSPESLSVENAIEYLKVIGAFD RNEELTILGKHLSMLPVEPKLGKMLIFGAIFNCLDPILTIVSGLSVRDPFLTPFDKKDRRGRAG RVQPGECYHLYPQCVYEAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRALQSPESLSVE NAIEYLKVIGAFDRNEELTILGKHLSMLPVEPKLGKMLIFGAIFNCLDPILTIVSGLSVRDPFL TPFDKKDRRGRAGRVQPGECYHLYPQCVYEAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFL SRALQSPESLSVENAIEYLKVIGAFDRNEELTILGKHLSMLPVEPKLGKMLIFGAIFNCLDPIL TIVSGLSVRDPFLTPFDKKD(+) MVTLPWLDSTSSSSSILLVKWSQEWISHTKSRNNG*(-) MLHTRIVDIDGNTPLVGLDQLFLVYPSCQMESRMDLSH*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Chu et al., 2017 |