Detail information of Os01g0118100_circ_g.5


General Information
CircRNA Name Os01g0118100_circ_g.5
ID in PlantcircBase osa_circ_000145
Alias Os_ciR5684
Organism Oryza sativa
Position chr1: 1027638-1027842  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os01g0118100
Parent gene annotation Similar to Fructose-bisphosphate aldolase. (Os01t0118100-01)
Parent gene strand +
Alternative splicing Os01g0118100_circ_g.1 Os01g0118100_circ_g.2 Os01g0118100_circ_g.3 Os01g0118100_circ_g.4
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os01t0118100-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGGATACTGGGTTGGTTGATGAAAACATGACTGCGTGCAATAAATGGAGCCGTGATGAAAATC
TAGTTCGGGCGGTCATTTGTGCAGGATTATATCCAGgctgaaagagatcgcaatggctatgact
actgctggaaaaattttctatccgtgcaaaccttgaaagccatagattcccttcggagacaatt
tctctttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGAAAGAGATCGCAATGGCTATGACTACTGCTGGAAAAATTTTCTATCCGTGCAAACCTTGA
AAGCCATAGATTCCCTTCGGAGACAATTTCTCTTTCTTCTCAGGGATACTGGGTTGGTTGATGA
AAACATGACTGCGTGCAATAAATGGAGCCGTGATGAAAATCTAGTTCGGGCGGTCATTTGTGCA
GGATTATATCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.355280366
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015