Detail information of BGIOSGA002654_circ_g.5


General Information
CircRNA Name BGIOSGA002654_circ_g.5
ID in PlantcircBase osi_circ_001770
Alias 1:1098814|1099425
Organism Oryza sativa ssp. indica
Position chr1: 1098814-1099425  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA002654
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA002654_circ_g.2 BGIOSGA002654_circ_g.3 BGIOSGA002654_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA002654-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTTTTGGTGCTATTTTTAATTGCCTTGATCCCATATTAACCATTGTTTCGGGACTTAGTGTG
AGAGATCCATTCTTGACTCCATTTGACAAGAAGGATagacgaggaagagctggtcgagtccaac
caggggagtgttaccatctatatccacaatgtgtgtatgaagcatttgctgactatcagttgcc
agaactcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGACGAGGAAGAGCTGGTCGAGTCCAACCAGGGGAGTGTTACCATCTATATCCACAATGTGTGT
ATGAAGCATTTGCTGACTATCAGTTGCCAGAACTCCTGAGAACTCCTCTGCAATCCCTCTGTTT
GCAAATAAAAAGCTTGCGCCTTGGGAGCATCTCTGAATTTTTATCCAGAGCTTTGCAATCACCT
GAGTCTCTATCGGTACTTGATTTCCGTATTAATCACAAGCCGCAAAAGTCTATCCTGTGTCTTG
GAATGACTTGATAAATTAATTTGAATTTTTTCAGGTAGAAAATGCCATTGAATATCTCAAAGTC
ATTGGAGCGTTTGATCGTAATGAAGAGTTAACAATTCTAGGTATCAGATCCATCCTTCAAATCA
TCCGTTTATCACTGCTTTATTGAATCATCTTGAGCATTTGTAGCATGTGCTAACTATACCCACG
GATTGGCATTACCAGGAAAGCACTTATCCATGCTTCCAGTTGAGCCTAAATTGGGGAAGATGCT
GATTTTTGGTGCTATTTTTAATTGCCTTGATCCCATATTAACCATTGTTTCGGGACTTAGTGTG
AGAGATCCATTCTTGACTCCATTTGACAAGAAGGAT
Conservation Information
Conserved circRNAs osa_circ_000143*
PMCS
Functional Information
Coding potential Y
Potential coding position 1098860-1099365(-)
1098888-1099384(-)
1099292-1099422(+)
Potential amino acid sequence MVTLPWLDSTSSSSSILLVKWSQEWISHTKSRNNG*(-)
MLHTHIVDIDGNTPLVGLDQLFLVYPSCQMESRMDLSH*(-)
MLPVEPKLGKMLIFGAIFNCLDPILTIVSGLSVRDPFLTPFDKKDRRGRAGRVQPGECYHLYPQ
CVYEAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRALQSPESLSVENAIEYLKVIGAFD
RNEELTILGKHLSMLPVEPKLGKMLIFGAIFNCLDPILTIVSGLSVRDPFLTPFDKKDRRGRAG
RVQPGECYHLYPQCVYEAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRALQSPESLSVE
NAIEYLKVIGAFDRNEELTILGKHLSMLPVEPKLGKMLIFGAIFNCLDPILTIVSGLSVRDPFL
TPFDKKDRRGRAGRVQPGECYHLYPQCVYEAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFL
SRALQSPESLSVENAIEYLKVIGAFDRNEELTILGKHLSMLPVEPKLGKMLIFGAIFNCLDPIL
TIVSGLSVRDPFLTPFDKKD(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021