Detail information of AT3G14660_circ_g.1


General Information
CircRNA Name AT3G14660_circ_g.1
ID in PlantcircBase ath_circ_021796
Alias At_ciR414, AT3G14660_C1
Organism Arabidpsis thaliana
Position chr3: 4926037-4926406  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder, find_circ, CIRI-full, CIRI2
Parent gene AT3G14660
Parent gene annotation Cytochrome P450 72A13
Parent gene strand +
Alternative splicing 3_circ_ag.6 3_circ_ag.7 3_circ_ag.8 3_circ_ag.9 AT3G14650_circ_g.1 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 AT3G14650_circ_g.6 3_circ_ag.7 3_circ_ag.8 3_circ_ag.9 3_circ_ag.10 AT3G14650_circ_g.11 3_circ_ag.12 3_circ_ag.13 3_circ_ag.14 AT3G14690_circ_g.1 AT3G14690_circ_g.2 AT3G14690_circ_g.3 AT3G14690_circ_g.4
Support reads 38/41/2
Tissues leaf/whole_plant/seedlings
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G14660.3:1
AT3G14660.1:1
AT3G14660.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGCCAACACCAAGATTGGCAGGCTCGTGCAAGAGAAGAAGTGAAGCAAGTTTTTGGCGATAAA
GAACCTGATGCAGAAGGCTTGAACCAGCTCAAAGTTttatttccctacaaagggtaatagaagg
atgaaagcagcagctagagaaatcaaatttatactgagagggatcgttaacaaaaggcttaggg
caagagaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 370
Transcript exons: 4926037-4926406
TTATTTCCCTACAAAGGGTAATAGAAGGATGAAAGCAGCAGCTAGAGAAATCAAATTTATACTG
AGAGGGATCGTTAACAAAAGGCTTAGGGCAAGAGAAGCTGGGGAAGCACCAAGTGACGATTTGC
TGGGTATACTTCTTGAATCGAATTTGGGACAAACAAAAGGAAATGGAATGAGTACCGAGGAACT
GATGGAGGAGTGCAAGTTGTTCTATTTCGCTGGGCAAGAGACTACTACAGTACTTCTGGTTTGG
ACAATGGTGTTGTTAAGCCAACACCAAGATTGGCAGGCTCGTGCAAGAGAAGAAGTGAAGCAAG
TTTTTGGCGATAAAGAACCTGATGCAGAAGGCTTGAACCAGCTCAAAGTT

Genomic sequence TTATTTCCCTACAAAGGGTAATAGAAGGATGAAAGCAGCAGCTAGAGAAATCAAATTTATACTG
AGAGGGATCGTTAACAAAAGGCTTAGGGCAAGAGAAGCTGGGGAAGCACCAAGTGACGATTTGC
TGGGTATACTTCTTGAATCGAATTTGGGACAAACAAAAGGAAATGGAATGAGTACCGAGGAACT
GATGGAGGAGTGCAAGTTGTTCTATTTCGCTGGGCAAGAGACTACTACAGTACTTCTGGTTTGG
ACAATGGTGTTGTTAAGCCAACACCAAGATTGGCAGGCTCGTGCAAGAGAAGAAGTGAAGCAAG
TTTTTGGCGATAAAGAACCTGATGCAGAAGGCTTGAACCAGCTCAAAGTT
Conservation Information
Conserved circRNAs NA
PMCS 0.690625992
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress