Detail information of 3_circ_ag.6


General Information
CircRNA Name 3_circ_ag.6
ID in PlantcircBase ath_circ_021778
Alias NA
Organism Arabidpsis thaliana
Position chr3: 4920537-4922800  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 3_circ_ag.7 3_circ_ag.8 3_circ_ag.9 AT3G14650_circ_g.1 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 AT3G14650_circ_g.6 3_circ_ag.7 3_circ_ag.8 3_circ_ag.9 3_circ_ag.10 AT3G14650_circ_g.11 3_circ_ag.12 3_circ_ag.13 3_circ_ag.14 AT3G14660_circ_g.1 AT3G14690_circ_g.1 AT3G14690_circ_g.2 AT3G14690_circ_g.3 AT3G14690_circ_g.4
Support reads 5
Tissues root, inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGCAGATTAATAGCCACTGGAGTCCTTAGTTATGATGGTGATAAATGGGCGAAACACCGAAGA
ATCATCAACCCGGCTTTCCACCTTGAGAAGATCAAGaatatggtacctgcgttccaccagagct
gcagcgatgttgttggcgaatggagcaagttagtgtcggataaagggtcgtcgtcctgtgaggt
agacgttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATATGGTACCTGCGTTCCACCAGAGCTGCAGCGATGTTGTTGGCGAATGGAGCAAGTTAGTGT
CGGATAAAGGGTCGTCGTCCTGTGAGGTAGACGTTTGGCCTTGGCTTGTGAGTATGACTGGAGA
TGTGATCTCTCGTACTGCTTTTGGCAGCAGCTACAAAGAAGGGCAGAGGATCTTTGAGCTACAA
GCAGAACTAGTACATCTCATCTTACAAGCTTTTTGGAAAGTTTACATCCCTGGATATCGGTAAT
AAAAGATCTCAACCTGCCTGGTTTTAGAACTTCACTAGTGCTGCAAACTATTACAGATTGTGAA
CCATGATGTGTCATATACTCATATTCTCTCTGTCTTCTGTTTGTGTAGTTATCTCCCTACGAAG
AGTAATAGAAGGATGAAAGCAGCAGCTAGAGAAATCCAAGTTATACTGAAAGGGATCGTTAACA
AAAGGTTAAGGGCGAGAGAAGCTGGGAAAGCAGCACCAAACGACGATTTGTTGGGAATACTTCT
TGAATCAAATTTGGGGCAAGCCAAAGGAAATGGAATGAGTACTGAGGATGTGATGGAGGAGTGC
AAGTTGTTCTATTTCGCCGGGCAAGAGACAACTTCGGTACTTCTGGTCTGGGCAATGGTGCTGT
TAAGCCACCACCAAGATTGGCAGGCTCGTGCACGAGAGGAAGTGAAGCAAGTTTTTGGCGATAA
AGAACCTGATACAGAATGTCTTAGCCAGCTCAAAGTTGTAAGTATAAACCAAATCATAAACCTT
CAGGTGACTTTAGTACTTTTATTGTGTTTAGATGGTTTTGCTGAATGTTTCCAACAGATGACAA
TGATATTATATGAGGTTCTCAGGCTATATCCTCCTGTAACTCACCTGACCCGAGCGATTGACAA
AGAGATGAAGCTAGGTGACTTGACACTACCAGCCGGTGTTCATATCAGTCTACCTATAATGCTA
GTCCAACGCGACCCCATGCTGTGGGGTACTGATGCAGCAGAATTTAAGCCTGAGAGATTCAAAG
ACGGTCTTTCAAAGGCAACAAAGAGCCAAGTCTCCTTCTTTCCATTTGCATGGGGACCGAGGAT
ATGCATCGGCCAGAATTTTGCCATGTTAGAGGCAAAGATGGCAATGGCGTTGATTCTACAGACA
TTCACCTTCGAGCTTTCTCCTTCCTATGTTCATGCGCCTCAAACAGTCGTTACCATTCACCCGC
AGTTCGGTGCACATCTTATTCTGCGCAAGCTATAATTCTATAACCACATGTGCTGTTGTCAAAT
AAACATAGGAAAATAATCCAGATCATAATATAAAACTCAAATCTTTTTCTTATTTGAAGTCAGA
ACTTTGTCCTCACATATGTCTTGAGAAACCAAAATATTTCCAATAAAAAGAGTGAAACGCATGG
ACCAATAGATTTCTTCCTCTTTTCGTCGCTTTTCACACAAAGTCCAAATATGCTTCTGCGCTTT
GGTGGCATGTGACTGTGAGGGTCCAAGTAAAGCAAAAGATCAATTAAGCACAACAAAATAATTG
TCCAAACCACCAAAATATAAAATATAAAATAATTTGTGACCATCATCACCACATCCATATCTTC
TCCGATATTCTAAACCCTGAGAATGGTCACAAATTCTCTAACTCTCTCTCTCTCTCTCTAGTAG
AAAACATGGAGATATCAGTTGCATCGGTAACAGTTTCTGTAGCTGTAGTTGTTGTGTCGTGGTG
GGTATGGAGAACTTTACAGTGGGTTTGGTTTAAACCAAAGATGCTTGAGAGTTACCTGAGAAGA
CAAGGTCTTGCTGGAACTCCTTACACGCCTCTTGTCGGTGATTTGAAGAAGAATTTTAGCATGC
GGGCTGAGGCAAGATCCAAACCCATCAACCTAACGGATGATATCACACCACGTATCGTACCTTA
TCCGTTGCAAATGCTCAAGACTCATGGTATGCTTCCTTGTTGGCATCTTGATTCCTCTTTGTTT
AGAACTATTGTAGAGTATCTAGAAAAGGTTTCAACTTTCGTATCTCTATGTGGTTGAAACAGGG
AGGACTTTCTTTACATGGTTTGGAGCCATACCAACAATCACCATAATGGATCCTGAGCAAATCA
CAGAAGTGCTCAACAAAGTTTATGATTTCCAGAAGGCACATACGTTTCCTCTGGGCAGATTAAT
AGCCACTGGAGTCCTTAGTTATGATGGTGATAAATGGGCGAAACACCGAAGAATCATCAACCCG
GCTTTCCACCTTGAGAAGATCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.809810485
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017