Detail information of Os04g0379500_circ_g.1


General Information
CircRNA Name Os04g0379500_circ_g.1
ID in PlantcircBase osa_circ_023566
Alias NA
Organism Oryza sativa
Position chr4: 18539829-18541323  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os04g0379500
Parent gene annotation Conserved hypothetical protein. (Os04t0379500-01);Non-protein co
ding transcript. (Os04t0379500-02)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os04t0379500-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCATGATGCCAATAGTCCACTACTATGCTTTACTGCTTTCAGATTAATGAAGATATCAGTTG
CAGAGAGGGCTATTGTGGTTCCTCAGCCATGGCAATgctgctggaatcgtggaagctgtgcgga
ggatctactcagatgttgatcgaaatggtgctggatttgggagctgttgttctcaattgccgtg
agtcagac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGCTGGAATCGTGGAAGCTGTGCGGAGGATCTACTCAGATGTTGATCGAAATGGTGCTGGAT
TTGGGAGCTGTTGTTCTCAATTGCCGTGAGTCAGACCATGAGTTTGTTGTCACAATCAACATCT
TCCTAGCGTTGGTATGCACTTGCCGATTGGGCATCTGCTAGAAAGAAACCAGCGTGTAAACTCT
GTGGCGTTGCACTCCAGGTGTTTGTGGTTTTGCTTATGTAGTGGTTTGAATTTTGCTTTGTGGT
ATGGTGCTTGCAGGGGCTGATCACTGGAGGTGTGATTCTGCTTGTCAGTTGAGGGAAGAATTCA
CACACTTGTGTTCACTGAGGACATCTTCTCAACCTATTGCTTCCACCGATCATCTTTAATGCTA
GGTGAGCTTTCTGTGTACCTGTATTTCATGTGGTTAACTCTCAACCAAAGTGGAGTTCATTTTT
TGTTTTTCTATACTGTAATAAAAAGTGACTTGTCTTATTTTAATTTGGTTTTGGGTAATTTAAT
CTTGAGAACAAAATGCGTTGCAATTGGACTCACTTGAGATATTCATGTAGTTCAGAAGTATACA
AATGATTGTATTATTTTCGCCGTTCTATATAAAATGTTTTCTATATCTCTGAATTTATCAAACC
CATGTGATTTGTGAATATGAAGGTACACTTATTGAATTGGATGTATGAAATAGGTAACTGCCCA
TTTATTCCTCTGAAATTATACTTAGAGAAAACGCATGCGCATGGACACTGTAGTGCAGACTCGC
ACTAATTCTCTCCATGAATCATGATACTAACTATAGGTCATAAGTATTATTCTGAGACATGGTC
TTGCATACTTTTGTTCTCTGACTATGGGACATGTCCTTGATGCCTATTCACGATCATTTTCAGG
AAATCTAAAATAAAGCTCTCTGTTTCAAAATACATGTAAAGAACAATTATTTTTAGAGGTCAAA
GTCTCCTGCTGCACGCATATCAGGATTGGACAAGCAACGTTGAAAAAGTTAAATGACTTATGCT
GCTAATATTGCTTATTCAATTGTAGGCTATATAGTTAATTATTACTTGCTACTCCCTCCATTCC
ATAATATAAGGTACAACTACTTTCTAAAGTTGTTTCATGATATAAGGCGTGCATGCATGTATGT
CATTAGCTAGCACATTTTTTCTACTAAAATATTATTATTTAAATCCTCTACAATCAAGATCTCT
AATTTTATTGGGTGCATGTATTCTATTTATTAGGGTAATCCAATCTATAAGGTGATAATAATTA
TTTATTGGTCTTTGTGTTAAGGGTGGTTGTGCCTTATATTTTGGAATGGAGGGAGTATTGTTTT
CGAGTGGTGCTCTTTTCATACTTGTTCCATTCCTTTTGCCAGATAATCAAGAACCATGATGCCA
ATAGTCCACTACTATGCTTTACTGCTTTCAGATTAATGAAGATATCAGTTGCAGAGAGGGCTAT
TGTGGTTCCTCAGCCATGGCAAT
Conservation Information
Conserved circRNAs osi_circ_014280 osi_circ_014282
PMCS 0.205192938
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017