Detail information of BGIOSGA015220_circ_ig.1


General Information
CircRNA Name BGIOSGA015220_circ_ig.1
ID in PlantcircBase osi_circ_014280
Alias Chr04:18965924_18967419(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 16017256-16018784  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015220_circ_ig.2 BGIOSGA015220_circ_ig.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCATGATGCCAATAGTCCACTACTATGCTTTACTGCTTTCAGATTAATGAAGATATCAGTTG
CAGAGAGGGCTATTGTGGTTCCTCAGCCATGGCAATggctgctggaatagtggaagctatggag
gatctactcagatgttgatcgaaatggtgctggatttgggagctgttgttctcaattgccgtga
gtcagacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCTGCTGGAATAGTGGAAGCTATGGAGGATCTACTCAGATGTTGATCGAAATGGTGCTGGATT
TGGGAGCTGTTGTTCTCAATTGCCGTGAGTCAGACCATGAGTTTGTTGTCACAGTCAACATCTT
CCTAGCGTTGGTATGCACTTGCATTGCAATTGGGCATCCCATCTGCTAGAAAGAAACCAGCGTG
TAAACTCTGTGCCGTTGCACTCCAGGTGTTTGTGGTTTTGCTTATGTAGTGGTTTGAATTTTGC
TTTGCGGTATGGTGCTTGCAGGGGCTGATCACTGGAGGTGTGATTCTGCTTGTCAGTTGAGGGA
AGAATTCACACACTTGTGTTCACTGAGGACATCTTCTCAACCTATTGCTTCCACCGATCATCTT
TAATGCTAGGTGAGCTTTCTGTGTACCTGTATTTCATGTGGTTAGCTCTCAACCAAAGTGGAGT
TCATTTTCTGTTCTTCTATACTGTAATAAAAAGTGACTTGTCTTATTTTAATTTGGTTTTGGGT
AATTTAATCTTGAGAACAAAATGCGTTGCAATAGGACTCACTTGAGATATTCATGTAGTTCAGA
AGTATACAAATGATTGTATTATTTTCGCCGTTCTATATAAAATGTTTTTCTATATCTCTGAATT
TATCAAACCCATGTGATTTGTGAATATGAAGGTACACTTATTGAATTGGATGTATGAAATAGGT
AACTGCCCATTTATTCCTCTGAAATTATACTTAGAGAAAACACATGCGCATGGACACTGTAGTG
CAGACTTGCACTAATGCTCTCCATGAATCATGATACTAACTGTAAGGTCATAAGTATTATTCTG
AGACATGGTCTTGCATACTTTTGTTCTCTGACTATGGGACATGTCCTTAATGCCTATTCACGAT
CATTTTCAGGAAATCTAAAATAAAGCTCTCTGTTTTAAAATACATGTAAAGAACAATTATTTTT
AGAGGTCAAAGTCTCCTGCTGCACGCATATCAGGATTCAGGACTTAAAAATAAGTTATGGAGGA
CAAGCAACGTTGAAAAAGTTAAATGACTTATGCTGCTAATATTGCTTATTCAATTTTAGGCTAT
ATAGTTAATTATTACTTGCTACTCCCTTCATTCCATAATATAAGGCACAACTACTTTCTAAAGT
TGTTTCATGATATAAGGCATGCATGCATGTATGTCATTAGCTAGCACATTTTTTCTACTAAAAT
ATTATTATTTAAATCCTCTACTATCAAGATCTCTAATTTTATTGGGTGCATGTATTCTATTTAT
TAGGGTAATCCAATCTATAAGGTGATAATAATTATTTATTGGTCTTTGGGTTAAGGGTGGTTGT
GCCTTATATTTTGGAATGGAGGGAGTATTGTTTTCGAGTGGTGCTCTTTTCATACTTGTTCCAT
TCCTTTTGCCAGATAATCAAGAACCATGATGCCAATAGTCCACTACTATGCTTTACTGCTTTCA
GATTAATGAAGATATCAGTTGCAGAGAGGGCTATTGTGGTTCCTCAGCCATGGCAAT
Conservation Information
Conserved circRNAs osa_circ_023566
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021