Detail information of BGIOSGA015220_circ_ig.3


General Information
CircRNA Name BGIOSGA015220_circ_ig.3
ID in PlantcircBase osi_circ_014282
Alias Chr04:18003072_18004600(MH63RS2), Chr04:18003072_18004600(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 16017257-16018785  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015220_circ_ig.1 BGIOSGA015220_circ_ig.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TG-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCATGATGCCAATAGTCCACTACTATGCTTTACTGCTTTCAGATTAATGAAGATATCAGTTGC
AGAGAGGGCTATTGTGGTTCCTCAGCCATGGCAATGgctgctggaatagtggaagctatggagg
atctactcagatgttgatcgaaatggtgctggatttgggagctgttgttctcaattgccgtgag
tcagacca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGCTGGAATAGTGGAAGCTATGGAGGATCTACTCAGATGTTGATCGAAATGGTGCTGGATTT
GGGAGCTGTTGTTCTCAATTGCCGTGAGTCAGACCATGAGTTTGTTGTCACAGTCAACATCTTC
CTAGCGTTGGTATGCACTTGCATTGCAATTGGGCATCCCATCTGCTAGAAAGAAACCAGCGTGT
AAACTCTGTGCCGTTGCACTCCAGGTGTTTGTGGTTTTGCTTATGTAGTGGTTTGAATTTTGCT
TTGCGGTATGGTGCTTGCAGGGGCTGATCACTGGAGGTGTGATTCTGCTTGTCAGTTGAGGGAA
GAATTCACACACTTGTGTTCACTGAGGACATCTTCTCAACCTATTGCTTCCACCGATCATCTTT
AATGCTAGGTGAGCTTTCTGTGTACCTGTATTTCATGTGGTTAGCTCTCAACCAAAGTGGAGTT
CATTTTCTGTTCTTCTATACTGTAATAAAAAGTGACTTGTCTTATTTTAATTTGGTTTTGGGTA
ATTTAATCTTGAGAACAAAATGCGTTGCAATAGGACTCACTTGAGATATTCATGTAGTTCAGAA
GTATACAAATGATTGTATTATTTTCGCCGTTCTATATAAAATGTTTTTCTATATCTCTGAATTT
ATCAAACCCATGTGATTTGTGAATATGAAGGTACACTTATTGAATTGGATGTATGAAATAGGTA
ACTGCCCATTTATTCCTCTGAAATTATACTTAGAGAAAACACATGCGCATGGACACTGTAGTGC
AGACTTGCACTAATGCTCTCCATGAATCATGATACTAACTGTAAGGTCATAAGTATTATTCTGA
GACATGGTCTTGCATACTTTTGTTCTCTGACTATGGGACATGTCCTTAATGCCTATTCACGATC
ATTTTCAGGAAATCTAAAATAAAGCTCTCTGTTTTAAAATACATGTAAAGAACAATTATTTTTA
GAGGTCAAAGTCTCCTGCTGCACGCATATCAGGATTCAGGACTTAAAAATAAGTTATGGAGGAC
AAGCAACGTTGAAAAAGTTAAATGACTTATGCTGCTAATATTGCTTATTCAATTTTAGGCTATA
TAGTTAATTATTACTTGCTACTCCCTTCATTCCATAATATAAGGCACAACTACTTTCTAAAGTT
GTTTCATGATATAAGGCATGCATGCATGTATGTCATTAGCTAGCACATTTTTTCTACTAAAATA
TTATTATTTAAATCCTCTACTATCAAGATCTCTAATTTTATTGGGTGCATGTATTCTATTTATT
AGGGTAATCCAATCTATAAGGTGATAATAATTATTTATTGGTCTTTGGGTTAAGGGTGGTTGTG
CCTTATATTTTGGAATGGAGGGAGTATTGTTTTCGAGTGGTGCTCTTTTCATACTTGTTCCATT
CCTTTTGCCAGATAATCAAGAACCATGATGCCAATAGTCCACTACTATGCTTTACTGCTTTCAG
ATTAATGAAGATATCAGTTGCAGAGAGGGCTATTGTGGTTCCTCAGCCATGGCAATG
Conservation Information
Conserved circRNAs osa_circ_023566
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021