Detail information of AT2G13370_circ_g.24


General Information
CircRNA Name AT2G13370_circ_g.24
ID in PlantcircBase ath_circ_013239
Alias NA
Organism Arabidpsis thaliana
Position chr2: 5553937-5554356  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G13370
Parent gene annotation Protein CHROMATIN REMODELING 5
Parent gene strand -
Alternative splicing AT2G13370_circ_g.1 AT2G13370_circ_g.2 AT2G13370_circ_g.3 AT2G13370_circ_g.4 AT2G13370_circ_g.5 AT2G13370_circ_g.6 AT2G13370_circ_g.7 AT2G13370_circ_g.8 AT2G13370_circ_g.9 AT2G13370_circ_g.10 AT2G13370_circ_g.11 AT2G13370_circ_g.12 AT2G13370_circ_g.13 AT2G13370_circ_g.14 AT2G13370_circ_g.15 AT2G13370_circ_g.16 AT2G13370_circ_g.17 AT2G13370_circ_g.18 AT2G13370_circ_g.19 AT2G13370_circ_g.20 AT2G13370_circ_g.21 AT2G13370_circ_g.22 AT2G13370_circ_g.23 AT2G13370_circ_g.25 AT2G13370_circ_g.26
Support reads 11
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G13370.2:1
AT2G13370.1:1
AT2G13370.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTGGGCTTTTTTGTTCCGTAGTCGTCCTCGTAATCGGAAAGATCAATTTCTTCATCACTCTC
AGGGTCTTCATCAGAAACGTCCCAACCTTGGCCATGcttttggtttttacgatttttcccatca
tctatatcttcactgtcttcactctctacataagagactttacgaactgatcgggtggagctgc
gaacttca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 420
Transcript exons: 5553937-5554356
CTTTTGGTTTTTACGATTTTTCCCATCATCTATATCTTCACTGTCTTCACTCTCTACATAAGAG
ACTTTACGAACTGATCGGGTGGAGCTGCGAACTTCACTACTCTGTCCTATGGTATTGGTGGACC
TTCCATTGTTTTGTCGGAGAGTTGTGCCTCTTCTGGCCAGGCTTCTAAAACCCTCATCATTGTC
ATTTTCAGAGTCTTCCTCTGAGTCGTCATCTTGATATGATGTTTTCCTCTTTTGTCGACTAGAA
ACATGGAATGATTTTCGTTCGAGTCCAGCGCTTGATTTCCGGAAACCTTTACTTTGTTGCCTAA
CCTTGGGCTTTTTTGTTCCGTAGTCGTCCTCGTAATCGGAAAGATCAATTTCTTCATCACTCTC
AGGGTCTTCATCAGAAACGTCCCAACCTTGGCCATG

Genomic sequence CTTTTGGTTTTTACGATTTTTCCCATCATCTATATCTTCACTGTCTTCACTCTCTACATAAGAG
ACTTTACGAACTGATCGGGTGGAGCTGCGAACTTCACTACTCTGTCCTATGGTATTGGTGGACC
TTCCATTGTTTTGTCGGAGAGTTGTGCCTCTTCTGGCCAGGCTTCTAAAACCCTCATCATTGTC
ATTTTCAGAGTCTTCCTCTGAGTCGTCATCTTGATATGATGTTTTCCTCTTTTGTCGACTAGAA
ACATGGAATGATTTTCGTTCGAGTCCAGCGCTTGATTTCCGGAAACCTTTACTTTGTTGCCTAA
CCTTGGGCTTTTTTGTTCCGTAGTCGTCCTCGTAATCGGAAAGATCAATTTCTTCATCACTCTC
AGGGTCTTCATCAGAAACGTCCCAACCTTGGCCATG
Conservation Information
Conserved circRNAs NA
PMCS 0.306104502
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017